Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02160

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02150 and CSW01_02155 are separated by 25 nucleotidesCSW01_02155 and CSW01_02160 are separated by 36 nucleotidesCSW01_02160 and CSW01_02165 overlap by 53 nucleotidesCSW01_02165 and CSW01_02170 overlap by 1 nucleotides CSW01_02150: CSW01_02150 - MSHA biogenesis protein MshB, at 433,610 to 434,164 _02150 CSW01_02155: CSW01_02155 - MSHA pilin protein MshA, at 434,190 to 434,726 _02155 CSW01_02160: CSW01_02160 - MSHA pilin protein MshC, at 434,763 to 435,251 _02160 CSW01_02165: CSW01_02165 - MSHA pilin protein MshD, at 435,199 to 435,810 _02165 CSW01_02170: CSW01_02170 - type II secretion system protein, at 435,810 to 436,580 _02170 Position (kb) 434 435 436Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 433.863 kb on + strand, within CSW01_02150at 433.951 kb on - strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.960 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 434.067 kb on + strand, within CSW01_02150at 434.090 kb on - strand, within CSW01_02150at 434.128 kb on + strandat 434.136 kb on - strandat 434.146 kb on - strandat 434.154 kb on + strandat 434.154 kb on - strandat 434.155 kb on - strandat 434.214 kb on + strandat 434.267 kb on + strand, within CSW01_02155at 434.302 kb on - strand, within CSW01_02155at 434.405 kb on - strand, within CSW01_02155at 434.412 kb on + strand, within CSW01_02155at 434.412 kb on + strand, within CSW01_02155at 434.433 kb on + strand, within CSW01_02155at 434.520 kb on - strand, within CSW01_02155at 434.526 kb on + strand, within CSW01_02155at 434.636 kb on + strand, within CSW01_02155at 434.644 kb on - strand, within CSW01_02155at 434.684 kb on + strandat 434.684 kb on + strandat 434.684 kb on + strandat 434.692 kb on - strandat 434.692 kb on - strandat 434.708 kb on + strandat 434.708 kb on + strandat 434.781 kb on + strandat 434.782 kb on + strandat 434.782 kb on + strandat 434.789 kb on - strandat 434.790 kb on - strandat 434.831 kb on - strand, within CSW01_02160at 434.861 kb on + strand, within CSW01_02160at 434.919 kb on + strand, within CSW01_02160at 434.919 kb on + strand, within CSW01_02160at 434.919 kb on + strand, within CSW01_02160at 434.922 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.947 kb on - strand, within CSW01_02160at 435.006 kb on + strand, within CSW01_02160at 435.014 kb on - strand, within CSW01_02160at 435.014 kb on - strand, within CSW01_02160at 435.014 kb on - strand, within CSW01_02160at 435.019 kb on - strand, within CSW01_02160at 435.051 kb on - strand, within CSW01_02160at 435.082 kb on - strand, within CSW01_02160at 435.132 kb on + strand, within CSW01_02160at 435.133 kb on + strand, within CSW01_02160at 435.155 kb on - strand, within CSW01_02160at 435.165 kb on - strand, within CSW01_02160at 435.187 kb on + strand, within CSW01_02160at 435.203 kb on + strandat 435.205 kb on - strandat 435.231 kb on + strandat 435.231 kb on + strandat 435.231 kb on + strandat 435.237 kb on + strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.279 kb on - strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.322 kb on - strand, within CSW01_02165at 435.353 kb on + strand, within CSW01_02165at 435.361 kb on - strand, within CSW01_02165at 435.361 kb on - strand, within CSW01_02165at 435.365 kb on + strand, within CSW01_02165at 435.397 kb on + strand, within CSW01_02165at 435.397 kb on + strand, within CSW01_02165at 435.405 kb on - strand, within CSW01_02165at 435.415 kb on - strand, within CSW01_02165at 435.415 kb on - strand, within CSW01_02165at 435.424 kb on + strand, within CSW01_02165at 435.424 kb on + strand, within CSW01_02165at 435.460 kb on + strand, within CSW01_02165at 435.462 kb on - strand, within CSW01_02165at 435.468 kb on - strand, within CSW01_02165at 435.500 kb on + strand, within CSW01_02165at 435.500 kb on + strand, within CSW01_02165at 435.508 kb on - strand, within CSW01_02165at 435.508 kb on - strand, within CSW01_02165at 435.508 kb on - strand, within CSW01_02165at 435.529 kb on - strand, within CSW01_02165at 435.593 kb on - strand, within CSW01_02165at 435.604 kb on - strand, within CSW01_02165at 435.719 kb on - strand, within CSW01_02165at 435.732 kb on + strand, within CSW01_02165at 435.781 kb on - strandat 435.792 kb on + strandat 435.801 kb on - strandat 435.812 kb on - strandat 435.814 kb on + strandat 435.847 kb on + strandat 435.855 kb on - strandat 435.855 kb on - strandat 435.894 kb on + strand, within CSW01_02170at 435.894 kb on - strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.977 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.986 kb on + strand, within CSW01_02170at 435.986 kb on + strand, within CSW01_02170at 435.993 kb on + strand, within CSW01_02170at 435.994 kb on - strand, within CSW01_02170at 435.994 kb on - strand, within CSW01_02170at 435.994 kb on - strand, within CSW01_02170at 435.994 kb on - strand, within CSW01_02170at 435.996 kb on + strand, within CSW01_02170at 436.004 kb on - strand, within CSW01_02170at 436.006 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.052 kb on - strand, within CSW01_02170at 436.052 kb on - strand, within CSW01_02170at 436.067 kb on + strand, within CSW01_02170at 436.093 kb on - strand, within CSW01_02170at 436.126 kb on + strand, within CSW01_02170at 436.167 kb on + strand, within CSW01_02170at 436.167 kb on + strand, within CSW01_02170at 436.175 kb on - strand, within CSW01_02170at 436.175 kb on - strand, within CSW01_02170at 436.182 kb on + strand, within CSW01_02170at 436.227 kb on - strand, within CSW01_02170at 436.239 kb on + strand, within CSW01_02170at 436.242 kb on - strand, within CSW01_02170

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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433,863 + CSW01_02150 0.46 -0.1
433,951 - CSW01_02150 0.61 +0.4
433,952 + CSW01_02150 0.62 -0.5
433,952 + CSW01_02150 0.62 +0.4
433,952 + CSW01_02150 0.62 -0.4
433,960 - CSW01_02150 0.63 -1.0
433,965 - CSW01_02150 0.64 +0.5
433,965 - CSW01_02150 0.64 -1.8
433,965 - CSW01_02150 0.64 +1.0
434,067 + CSW01_02150 0.82 +0.8
434,090 - CSW01_02150 0.86 -1.7
434,128 + +0.2
434,136 - -0.6
434,146 - +0.9
434,154 + +0.7
434,154 - -0.7
434,155 - -3.0
434,214 + -2.1
434,267 + CSW01_02155 0.14 -2.8
434,302 - CSW01_02155 0.21 +0.8
434,405 - CSW01_02155 0.40 -0.2
434,412 + CSW01_02155 0.41 -2.0
434,412 + CSW01_02155 0.41 +0.0
434,433 + CSW01_02155 0.45 -4.0
434,520 - CSW01_02155 0.61 -0.2
434,526 + CSW01_02155 0.63 +0.7
434,636 + CSW01_02155 0.83 -1.4
434,644 - CSW01_02155 0.85 -2.3
434,684 + -1.1
434,684 + -0.2
434,684 + -4.1
434,692 - -0.3
434,692 - -0.5
434,708 + -0.9
434,708 + +1.0
434,781 + -4.2
434,782 + +1.0
434,782 + +0.2
434,789 - -1.9
434,790 - -0.6
434,831 - CSW01_02160 0.14 -1.6
434,861 + CSW01_02160 0.20 -2.8
434,919 + CSW01_02160 0.32 -2.9
434,919 + CSW01_02160 0.32 -0.3
434,919 + CSW01_02160 0.32 -3.7
434,922 - CSW01_02160 0.33 -0.7
434,927 - CSW01_02160 0.34 -2.7
434,927 - CSW01_02160 0.34 -1.6
434,927 - CSW01_02160 0.34 -0.1
434,927 - CSW01_02160 0.34 -1.1
434,927 - CSW01_02160 0.34 -1.0
434,947 - CSW01_02160 0.38 +0.8
435,006 + CSW01_02160 0.50 -1.8
435,014 - CSW01_02160 0.51 -3.2
435,014 - CSW01_02160 0.51 -0.2
435,014 - CSW01_02160 0.51 -0.2
435,019 - CSW01_02160 0.52 -1.8
435,051 - CSW01_02160 0.59 -0.4
435,082 - CSW01_02160 0.65 -0.8
435,132 + CSW01_02160 0.75 -2.7
435,133 + CSW01_02160 0.76 -0.3
435,155 - CSW01_02160 0.80 +0.4
435,165 - CSW01_02160 0.82 -0.3
435,187 + CSW01_02160 0.87 -0.1
435,203 + -1.0
435,205 - +0.2
435,231 + -3.6
435,231 + -1.3
435,231 + -1.1
435,237 + -2.2
435,239 - +1.6
435,239 - -0.7
435,239 - -0.0
435,239 - -1.5
435,239 - -0.0
435,239 - +0.2
435,279 - CSW01_02165 0.13 -1.3
435,314 + CSW01_02165 0.19 +1.7
435,314 + CSW01_02165 0.19 +2.1
435,314 + CSW01_02165 0.19 +1.5
435,314 + CSW01_02165 0.19 +0.5
435,314 + CSW01_02165 0.19 +0.6
435,314 + CSW01_02165 0.19 +0.6
435,322 - CSW01_02165 0.20 -0.9
435,353 + CSW01_02165 0.25 +1.2
435,361 - CSW01_02165 0.26 +0.5
435,361 - CSW01_02165 0.26 -2.2
435,365 + CSW01_02165 0.27 +0.7
435,397 + CSW01_02165 0.32 -2.5
435,397 + CSW01_02165 0.32 -1.0
435,405 - CSW01_02165 0.34 -3.7
435,415 - CSW01_02165 0.35 +0.9
435,415 - CSW01_02165 0.35 +1.3
435,424 + CSW01_02165 0.37 -1.4
435,424 + CSW01_02165 0.37 +1.0
435,460 + CSW01_02165 0.43 -1.2
435,462 - CSW01_02165 0.43 -2.5
435,468 - CSW01_02165 0.44 -0.9
435,500 + CSW01_02165 0.49 +0.6
435,500 + CSW01_02165 0.49 -2.2
435,508 - CSW01_02165 0.50 -1.1
435,508 - CSW01_02165 0.50 +0.4
435,508 - CSW01_02165 0.50 +0.3
435,529 - CSW01_02165 0.54 -0.4
435,593 - CSW01_02165 0.64 -1.2
435,604 - CSW01_02165 0.66 -0.2
435,719 - CSW01_02165 0.85 -1.0
435,732 + CSW01_02165 0.87 -2.8
435,781 - -0.5
435,792 + -1.4
435,801 - -0.9
435,812 - -1.2
435,814 + +0.6
435,847 + -0.3
435,855 - +0.1
435,855 - +0.5
435,894 + CSW01_02170 0.11 +1.1
435,894 - CSW01_02170 0.11 +0.2
435,976 + CSW01_02170 0.22 +0.4
435,976 + CSW01_02170 0.22 +0.3
435,976 + CSW01_02170 0.22 -0.9
435,976 + CSW01_02170 0.22 -1.5
435,976 + CSW01_02170 0.22 -1.1
435,976 + CSW01_02170 0.22 -1.1
435,976 + CSW01_02170 0.22 +0.6
435,976 + CSW01_02170 0.22 -2.0
435,977 - CSW01_02170 0.22 -0.7
435,984 - CSW01_02170 0.23 -0.2
435,984 - CSW01_02170 0.23 +0.8
435,984 - CSW01_02170 0.23 -3.1
435,984 - CSW01_02170 0.23 -1.9
435,984 - CSW01_02170 0.23 -2.5
435,984 - CSW01_02170 0.23 -3.8
435,984 - CSW01_02170 0.23 +0.7
435,984 - CSW01_02170 0.23 -1.8
435,984 - CSW01_02170 0.23 -0.7
435,986 + CSW01_02170 0.23 +1.8
435,986 + CSW01_02170 0.23 +0.2
435,993 + CSW01_02170 0.24 -1.0
435,994 - CSW01_02170 0.24 +1.4
435,994 - CSW01_02170 0.24 -3.5
435,994 - CSW01_02170 0.24 -0.6
435,994 - CSW01_02170 0.24 -0.2
435,996 + CSW01_02170 0.24 -3.5
436,004 - CSW01_02170 0.25 -1.9
436,006 + CSW01_02170 0.25 +0.2
436,044 + CSW01_02170 0.30 +0.1
436,044 + CSW01_02170 0.30 +0.2
436,044 + CSW01_02170 0.30 -1.3
436,044 + CSW01_02170 0.30 -0.0
436,044 + CSW01_02170 0.30 -0.9
436,044 + CSW01_02170 0.30 +2.3
436,044 + CSW01_02170 0.30 -2.0
436,044 + CSW01_02170 0.30 +1.4
436,052 - CSW01_02170 0.31 -3.4
436,052 - CSW01_02170 0.31 +2.7
436,067 + CSW01_02170 0.33 +0.2
436,093 - CSW01_02170 0.37 -2.5
436,126 + CSW01_02170 0.41 -3.2
436,167 + CSW01_02170 0.46 -3.6
436,167 + CSW01_02170 0.46 +0.5
436,175 - CSW01_02170 0.47 -1.8
436,175 - CSW01_02170 0.47 +1.6
436,182 + CSW01_02170 0.48 +0.6
436,227 - CSW01_02170 0.54 -0.5
436,239 + CSW01_02170 0.56 -3.7
436,242 - CSW01_02170 0.56 -3.1

Or see this region's nucleotide sequence