Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01930 and CSW01_01935 are separated by 15 nucleotides CSW01_01935 and CSW01_01940 are separated by 33 nucleotides CSW01_01940 and CSW01_01945 are separated by 61 nucleotides CSW01_01945 and CSW01_01950 are separated by 125 nucleotides
CSW01_01930: CSW01_01930 - primosomal replication protein N, at 383,310 to 383,612
_01930
CSW01_01935: CSW01_01935 - 30S ribosomal protein S18, at 383,628 to 383,855
_01935
CSW01_01940: CSW01_01940 - 50S ribosomal protein L9, at 383,889 to 384,338
_01940
CSW01_01945: CSW01_01945 - DUF481 domain-containing protein, at 384,400 to 385,209
_01945
CSW01_01950: CSW01_01950 - replicative DNA helicase, at 385,335 to 386,741
_01950
Position (kb) 384
385
386 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 383.831 kb on + strand, within CSW01_01935 at 383.929 kb on + strand at 384.199 kb on + strand, within CSW01_01940 at 384.254 kb on + strand, within CSW01_01940 at 384.445 kb on + strand at 384.601 kb on + strand, within CSW01_01945 at 384.601 kb on + strand, within CSW01_01945 at 384.601 kb on + strand, within CSW01_01945 at 384.601 kb on + strand, within CSW01_01945 at 384.609 kb on - strand, within CSW01_01945 at 384.886 kb on + strand, within CSW01_01945 at 384.893 kb on + strand, within CSW01_01945 at 384.909 kb on - strand, within CSW01_01945 at 384.911 kb on + strand, within CSW01_01945 at 384.948 kb on + strand, within CSW01_01945 at 384.950 kb on + strand, within CSW01_01945 at 384.956 kb on - strand, within CSW01_01945 at 385.000 kb on + strand, within CSW01_01945 at 385.014 kb on - strand, within CSW01_01945 at 385.080 kb on + strand, within CSW01_01945 at 385.090 kb on - strand, within CSW01_01945 at 385.118 kb on + strand, within CSW01_01945 at 385.121 kb on + strand, within CSW01_01945 at 385.126 kb on - strand, within CSW01_01945 at 385.126 kb on - strand, within CSW01_01945 at 385.136 kb on - strand at 385.142 kb on - strand at 385.170 kb on - strand at 385.177 kb on + strand at 385.190 kb on - strand at 385.232 kb on + strand at 385.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 383,831 + CSW01_01935 0.89 -0.7 383,929 + -1.3 384,199 + CSW01_01940 0.69 -1.4 384,254 + CSW01_01940 0.81 -1.1 384,445 + +0.4 384,601 + CSW01_01945 0.25 -0.5 384,601 + CSW01_01945 0.25 -0.6 384,601 + CSW01_01945 0.25 +0.2 384,601 + CSW01_01945 0.25 +0.8 384,609 - CSW01_01945 0.26 -1.2 384,886 + CSW01_01945 0.60 +0.8 384,893 + CSW01_01945 0.61 +1.4 384,909 - CSW01_01945 0.63 +1.1 384,911 + CSW01_01945 0.63 -3.8 384,948 + CSW01_01945 0.68 +0.7 384,950 + CSW01_01945 0.68 +2.0 384,956 - CSW01_01945 0.69 +0.3 385,000 + CSW01_01945 0.74 -0.8 385,014 - CSW01_01945 0.76 +0.4 385,080 + CSW01_01945 0.84 +0.7 385,090 - CSW01_01945 0.85 +2.1 385,118 + CSW01_01945 0.89 -3.5 385,121 + CSW01_01945 0.89 -1.0 385,126 - CSW01_01945 0.90 +0.6 385,126 - CSW01_01945 0.90 +0.9 385,136 - -2.1 385,142 - -2.3 385,170 - -0.0 385,177 + -0.7 385,190 - +1.3 385,232 + +0.2 385,309 + -2.4
Or see this region's nucleotide sequence