Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01810 and CSW01_01815 are separated by 204 nucleotides CSW01_01815 and CSW01_01820 overlap by 34 nucleotides
CSW01_01810: CSW01_01810 - tRNA epoxyqueuosine(34) reductase QueG, at 362,316 to 363,425
_01810
CSW01_01815: CSW01_01815 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 363,630 to 364,094
_01815
CSW01_01820: CSW01_01820 - N-acetylmuramoyl-L-alanine amidase, at 364,061 to 365,806
_01820
Position (kb) 363
364
365 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 362.659 kb on - strand, within CSW01_01810 at 362.659 kb on - strand, within CSW01_01810 at 362.659 kb on - strand, within CSW01_01810 at 362.670 kb on + strand, within CSW01_01810 at 362.686 kb on + strand, within CSW01_01810 at 362.696 kb on + strand, within CSW01_01810 at 362.742 kb on + strand, within CSW01_01810 at 362.758 kb on - strand, within CSW01_01810 at 362.760 kb on - strand, within CSW01_01810 at 362.767 kb on - strand, within CSW01_01810 at 362.772 kb on - strand, within CSW01_01810 at 362.774 kb on + strand, within CSW01_01810 at 362.774 kb on + strand, within CSW01_01810 at 362.779 kb on + strand, within CSW01_01810 at 362.784 kb on + strand, within CSW01_01810 at 362.853 kb on - strand, within CSW01_01810 at 362.886 kb on + strand, within CSW01_01810 at 363.100 kb on + strand, within CSW01_01810 at 363.100 kb on + strand, within CSW01_01810 at 363.163 kb on - strand, within CSW01_01810 at 363.215 kb on + strand, within CSW01_01810 at 363.228 kb on + strand, within CSW01_01810 at 363.244 kb on - strand, within CSW01_01810 at 363.274 kb on + strand, within CSW01_01810 at 363.291 kb on + strand, within CSW01_01810 at 363.441 kb on - strand at 363.446 kb on - strand at 363.446 kb on - strand at 363.446 kb on - strand at 363.482 kb on + strand at 363.550 kb on - strand at 364.083 kb on + strand at 364.148 kb on + strand at 364.156 kb on - strand at 364.189 kb on + strand at 364.197 kb on - strand at 364.248 kb on + strand, within CSW01_01820 at 364.248 kb on + strand, within CSW01_01820 at 364.256 kb on - strand, within CSW01_01820 at 364.266 kb on - strand, within CSW01_01820 at 364.268 kb on - strand, within CSW01_01820 at 364.273 kb on - strand, within CSW01_01820 at 364.278 kb on - strand, within CSW01_01820 at 364.462 kb on - strand, within CSW01_01820 at 364.510 kb on - strand, within CSW01_01820 at 364.528 kb on + strand, within CSW01_01820 at 364.557 kb on + strand, within CSW01_01820 at 364.557 kb on + strand, within CSW01_01820 at 364.612 kb on - strand, within CSW01_01820 at 364.612 kb on - strand, within CSW01_01820 at 364.638 kb on - strand, within CSW01_01820 at 364.673 kb on - strand, within CSW01_01820 at 364.696 kb on + strand, within CSW01_01820 at 364.704 kb on - strand, within CSW01_01820 at 364.724 kb on + strand, within CSW01_01820 at 364.841 kb on - strand, within CSW01_01820 at 364.985 kb on + strand, within CSW01_01820 at 364.993 kb on - strand, within CSW01_01820 at 365.016 kb on - strand, within CSW01_01820 at 365.065 kb on + strand, within CSW01_01820 at 365.073 kb on - strand, within CSW01_01820 at 365.083 kb on + strand, within CSW01_01820
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 362,659 - CSW01_01810 0.31 +0.9 362,659 - CSW01_01810 0.31 -0.4 362,659 - CSW01_01810 0.31 -1.4 362,670 + CSW01_01810 0.32 +0.2 362,686 + CSW01_01810 0.33 +0.4 362,696 + CSW01_01810 0.34 +0.7 362,742 + CSW01_01810 0.38 +1.2 362,758 - CSW01_01810 0.40 -0.3 362,760 - CSW01_01810 0.40 +0.5 362,767 - CSW01_01810 0.41 -1.2 362,772 - CSW01_01810 0.41 -3.0 362,774 + CSW01_01810 0.41 +0.2 362,774 + CSW01_01810 0.41 +0.3 362,779 + CSW01_01810 0.42 +1.0 362,784 + CSW01_01810 0.42 -1.3 362,853 - CSW01_01810 0.48 +0.6 362,886 + CSW01_01810 0.51 -1.7 363,100 + CSW01_01810 0.71 +0.2 363,100 + CSW01_01810 0.71 +1.1 363,163 - CSW01_01810 0.76 -1.6 363,215 + CSW01_01810 0.81 -0.1 363,228 + CSW01_01810 0.82 +0.5 363,244 - CSW01_01810 0.84 -0.3 363,274 + CSW01_01810 0.86 -2.0 363,291 + CSW01_01810 0.88 -3.9 363,441 - -0.7 363,446 - +2.2 363,446 - -2.8 363,446 - -1.4 363,482 + -0.1 363,550 - -1.7 364,083 + -0.7 364,148 + -2.8 364,156 - -1.7 364,189 + -1.4 364,197 - -0.9 364,248 + CSW01_01820 0.11 -3.3 364,248 + CSW01_01820 0.11 -0.4 364,256 - CSW01_01820 0.11 -2.4 364,266 - CSW01_01820 0.12 -3.7 364,268 - CSW01_01820 0.12 -3.0 364,273 - CSW01_01820 0.12 -1.9 364,278 - CSW01_01820 0.12 -2.8 364,462 - CSW01_01820 0.23 -2.9 364,510 - CSW01_01820 0.26 -5.5 364,528 + CSW01_01820 0.27 -1.9 364,557 + CSW01_01820 0.28 -2.7 364,557 + CSW01_01820 0.28 -3.4 364,612 - CSW01_01820 0.32 -3.4 364,612 - CSW01_01820 0.32 -3.3 364,638 - CSW01_01820 0.33 -3.6 364,673 - CSW01_01820 0.35 -0.7 364,696 + CSW01_01820 0.36 -0.3 364,704 - CSW01_01820 0.37 -2.3 364,724 + CSW01_01820 0.38 -3.7 364,841 - CSW01_01820 0.45 -3.4 364,985 + CSW01_01820 0.53 -1.1 364,993 - CSW01_01820 0.53 -3.7 365,016 - CSW01_01820 0.55 -2.2 365,065 + CSW01_01820 0.58 -2.6 365,073 - CSW01_01820 0.58 -3.9 365,083 + CSW01_01820 0.59 -1.6
Or see this region's nucleotide sequence