Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01725

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01720 and CSW01_01725 are separated by 5 nucleotidesCSW01_01725 and CSW01_01730 are separated by 86 nucleotides CSW01_01720: CSW01_01720 - uroporphyrinogen decarboxylase, at 349,251 to 350,330 _01720 CSW01_01725: CSW01_01725 - TetR family transcriptional regulator, at 350,336 to 351,064 _01725 CSW01_01730: CSW01_01730 - acetyltransferase, at 351,151 to 352,110 _01730 Position (kb) 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 350.384 kb on + strandat 350.384 kb on + strandat 350.384 kb on + strandat 350.392 kb on - strandat 350.477 kb on - strand, within CSW01_01725at 350.483 kb on + strand, within CSW01_01725at 350.494 kb on + strand, within CSW01_01725at 350.506 kb on + strand, within CSW01_01725at 350.507 kb on - strand, within CSW01_01725at 350.527 kb on + strand, within CSW01_01725at 350.596 kb on + strand, within CSW01_01725at 350.596 kb on + strand, within CSW01_01725at 350.637 kb on - strand, within CSW01_01725at 350.649 kb on - strand, within CSW01_01725at 350.775 kb on + strand, within CSW01_01725at 350.907 kb on + strand, within CSW01_01725at 350.946 kb on - strand, within CSW01_01725at 351.031 kb on + strandat 351.053 kb on + strandat 351.053 kb on + strandat 351.061 kb on - strandat 351.061 kb on - strandat 351.061 kb on - strandat 351.061 kb on - strandat 351.072 kb on - strandat 351.079 kb on - strandat 351.085 kb on + strandat 351.415 kb on + strand, within CSW01_01730at 351.454 kb on - strand, within CSW01_01730at 351.523 kb on - strand, within CSW01_01730at 351.532 kb on + strand, within CSW01_01730at 351.532 kb on + strand, within CSW01_01730at 351.540 kb on - strand, within CSW01_01730at 351.546 kb on + strand, within CSW01_01730at 351.579 kb on - strand, within CSW01_01730at 351.598 kb on - strand, within CSW01_01730at 351.640 kb on - strand, within CSW01_01730at 351.652 kb on + strand, within CSW01_01730at 351.713 kb on - strand, within CSW01_01730at 351.905 kb on - strand, within CSW01_01730at 351.939 kb on + strand, within CSW01_01730at 351.939 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.947 kb on - strand, within CSW01_01730at 351.951 kb on + strand, within CSW01_01730at 351.951 kb on + strand, within CSW01_01730at 351.959 kb on - strand, within CSW01_01730at 351.972 kb on - strand, within CSW01_01730at 351.972 kb on - strand, within CSW01_01730

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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350,384 + -0.5
350,384 + -1.1
350,384 + +0.4
350,392 - +1.3
350,477 - CSW01_01725 0.19 +0.7
350,483 + CSW01_01725 0.20 +0.8
350,494 + CSW01_01725 0.22 +2.3
350,506 + CSW01_01725 0.23 -3.6
350,507 - CSW01_01725 0.23 -0.2
350,527 + CSW01_01725 0.26 -3.4
350,596 + CSW01_01725 0.36 +0.7
350,596 + CSW01_01725 0.36 -1.6
350,637 - CSW01_01725 0.41 -3.1
350,649 - CSW01_01725 0.43 +0.4
350,775 + CSW01_01725 0.60 -1.8
350,907 + CSW01_01725 0.78 -2.6
350,946 - CSW01_01725 0.84 +1.7
351,031 + -0.4
351,053 + +0.4
351,053 + +2.1
351,061 - -1.0
351,061 - -0.9
351,061 - -1.8
351,061 - -1.7
351,072 - +0.4
351,079 - -0.7
351,085 + +1.6
351,415 + CSW01_01730 0.28 -0.1
351,454 - CSW01_01730 0.32 -0.6
351,523 - CSW01_01730 0.39 -2.3
351,532 + CSW01_01730 0.40 +1.2
351,532 + CSW01_01730 0.40 -0.9
351,540 - CSW01_01730 0.41 -0.2
351,546 + CSW01_01730 0.41 -0.6
351,579 - CSW01_01730 0.45 +1.6
351,598 - CSW01_01730 0.47 -0.9
351,640 - CSW01_01730 0.51 +2.6
351,652 + CSW01_01730 0.52 -0.1
351,713 - CSW01_01730 0.59 +1.3
351,905 - CSW01_01730 0.79 +0.3
351,939 + CSW01_01730 0.82 -1.3
351,939 - CSW01_01730 0.82 -2.2
351,947 - CSW01_01730 0.83 +0.5
351,947 - CSW01_01730 0.83 +1.1
351,947 - CSW01_01730 0.83 -0.5
351,947 - CSW01_01730 0.83 +2.0
351,947 - CSW01_01730 0.83 +0.1
351,947 - CSW01_01730 0.83 -0.1
351,951 + CSW01_01730 0.83 -0.4
351,951 + CSW01_01730 0.83 -0.4
351,959 - CSW01_01730 0.84 +2.0
351,972 - CSW01_01730 0.86 -0.7
351,972 - CSW01_01730 0.86 -1.8

Or see this region's nucleotide sequence