Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01575 and CSW01_01580 overlap by 4 nucleotides CSW01_01580 and CSW01_01585 are separated by 15 nucleotides
CSW01_01575: CSW01_01575 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 319,468 to 321,309
_01575
CSW01_01580: CSW01_01580 - ferredoxin, at 321,306 to 321,575
_01580
CSW01_01585: CSW01_01585 - NAD(P)H-flavin reductase, at 321,591 to 322,301
_01585
Position (kb) 321
322 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 321.300 kb on - strand at 321.302 kb on - strand at 321.308 kb on + strand at 321.310 kb on + strand at 321.316 kb on - strand at 321.316 kb on - strand at 321.316 kb on - strand at 321.323 kb on + strand at 321.369 kb on - strand, within CSW01_01580 at 321.433 kb on + strand, within CSW01_01580 at 321.452 kb on - strand, within CSW01_01580 at 321.485 kb on + strand, within CSW01_01580 at 321.528 kb on + strand, within CSW01_01580 at 321.528 kb on + strand, within CSW01_01580 at 321.578 kb on - strand at 321.578 kb on - strand at 321.623 kb on + strand at 321.626 kb on - strand at 321.676 kb on - strand, within CSW01_01585 at 321.700 kb on - strand, within CSW01_01585 at 321.700 kb on - strand, within CSW01_01585 at 321.779 kb on + strand, within CSW01_01585 at 321.805 kb on + strand, within CSW01_01585 at 321.813 kb on - strand, within CSW01_01585 at 321.881 kb on + strand, within CSW01_01585 at 321.892 kb on + strand, within CSW01_01585 at 321.947 kb on - strand, within CSW01_01585 at 321.983 kb on + strand, within CSW01_01585 at 321.993 kb on - strand, within CSW01_01585 at 322.007 kb on + strand, within CSW01_01585 at 322.007 kb on + strand, within CSW01_01585 at 322.007 kb on + strand, within CSW01_01585 at 322.007 kb on + strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.015 kb on - strand, within CSW01_01585 at 322.032 kb on + strand, within CSW01_01585 at 322.034 kb on + strand, within CSW01_01585 at 322.034 kb on + strand, within CSW01_01585 at 322.037 kb on - strand, within CSW01_01585 at 322.037 kb on - strand, within CSW01_01585 at 322.050 kb on - strand, within CSW01_01585 at 322.080 kb on + strand, within CSW01_01585 at 322.080 kb on + strand, within CSW01_01585 at 322.108 kb on - strand, within CSW01_01585 at 322.119 kb on - strand, within CSW01_01585 at 322.193 kb on + strand, within CSW01_01585 at 322.201 kb on - strand, within CSW01_01585 at 322.201 kb on - strand, within CSW01_01585 at 322.201 kb on - strand, within CSW01_01585 at 322.201 kb on - strand, within CSW01_01585 at 322.215 kb on - strand, within CSW01_01585 at 322.284 kb on + strand at 322.292 kb on - strand at 322.301 kb on + strand at 322.308 kb on + strand at 322.308 kb on + strand at 322.338 kb on + strand at 322.376 kb on + strand at 322.384 kb on - strand at 322.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 321,300 - +0.8 321,302 - -0.9 321,308 + -2.8 321,310 + -1.3 321,316 - +0.7 321,316 - -0.5 321,316 - +0.5 321,323 + +0.2 321,369 - CSW01_01580 0.23 -3.3 321,433 + CSW01_01580 0.47 +0.2 321,452 - CSW01_01580 0.54 -0.6 321,485 + CSW01_01580 0.66 -3.8 321,528 + CSW01_01580 0.82 -1.6 321,528 + CSW01_01580 0.82 -1.0 321,578 - +1.4 321,578 - -1.3 321,623 + -1.5 321,626 - +0.1 321,676 - CSW01_01585 0.12 -0.1 321,700 - CSW01_01585 0.15 +0.5 321,700 - CSW01_01585 0.15 +0.9 321,779 + CSW01_01585 0.26 +0.3 321,805 + CSW01_01585 0.30 -0.6 321,813 - CSW01_01585 0.31 +0.3 321,881 + CSW01_01585 0.41 -2.4 321,892 + CSW01_01585 0.42 -1.5 321,947 - CSW01_01585 0.50 +1.6 321,983 + CSW01_01585 0.55 +0.8 321,993 - CSW01_01585 0.57 -1.6 322,007 + CSW01_01585 0.59 +0.1 322,007 + CSW01_01585 0.59 +0.7 322,007 + CSW01_01585 0.59 +0.1 322,007 + CSW01_01585 0.59 -1.6 322,015 - CSW01_01585 0.60 +0.5 322,015 - CSW01_01585 0.60 +0.0 322,015 - CSW01_01585 0.60 +1.1 322,015 - CSW01_01585 0.60 +1.9 322,015 - CSW01_01585 0.60 -1.4 322,015 - CSW01_01585 0.60 -0.4 322,032 + CSW01_01585 0.62 -3.2 322,034 + CSW01_01585 0.62 -0.0 322,034 + CSW01_01585 0.62 -1.1 322,037 - CSW01_01585 0.63 +0.5 322,037 - CSW01_01585 0.63 -0.2 322,050 - CSW01_01585 0.65 -0.7 322,080 + CSW01_01585 0.69 -1.3 322,080 + CSW01_01585 0.69 -3.0 322,108 - CSW01_01585 0.73 -0.4 322,119 - CSW01_01585 0.74 +1.8 322,193 + CSW01_01585 0.85 +1.1 322,201 - CSW01_01585 0.86 +1.0 322,201 - CSW01_01585 0.86 -1.3 322,201 - CSW01_01585 0.86 -0.6 322,201 - CSW01_01585 0.86 +0.4 322,215 - CSW01_01585 0.88 -2.7 322,284 + +0.0 322,292 - +2.4 322,301 + -0.7 322,308 + -3.1 322,308 + -0.2 322,338 + +0.6 322,376 + -0.0 322,384 - +0.4 322,501 - +1.1
Or see this region's nucleotide sequence