Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01375

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01370 and CSW01_01375 are separated by 54 nucleotidesCSW01_01375 and CSW01_01380 overlap by 1 nucleotidesCSW01_01380 and CSW01_01385 are separated by 73 nucleotides CSW01_01370: CSW01_01370 - mechanosensitive ion channel family protein, at 269,437 to 270,675 _01370 CSW01_01375: CSW01_01375 - IclR family transcriptional regulator, at 270,730 to 271,302 _01375 CSW01_01380: CSW01_01380 - D-2-hydroxyacid dehydrogenase, at 271,302 to 272,225 _01380 CSW01_01385: CSW01_01385 - DUF416 domain-containing protein, at 272,299 to 272,886 _01385 Position (kb) 270 271 272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 269.781 kb on - strand, within CSW01_01370at 269.833 kb on + strand, within CSW01_01370at 269.841 kb on - strand, within CSW01_01370at 269.881 kb on + strand, within CSW01_01370at 269.915 kb on - strand, within CSW01_01370at 269.983 kb on + strand, within CSW01_01370at 269.983 kb on + strand, within CSW01_01370at 270.001 kb on + strand, within CSW01_01370at 270.014 kb on - strand, within CSW01_01370at 270.058 kb on + strand, within CSW01_01370at 270.164 kb on - strand, within CSW01_01370at 270.172 kb on - strand, within CSW01_01370at 270.240 kb on + strand, within CSW01_01370at 270.248 kb on - strand, within CSW01_01370at 270.248 kb on - strand, within CSW01_01370at 270.288 kb on + strand, within CSW01_01370at 270.298 kb on + strand, within CSW01_01370at 270.298 kb on + strand, within CSW01_01370at 270.324 kb on - strand, within CSW01_01370at 270.365 kb on + strand, within CSW01_01370at 270.366 kb on + strand, within CSW01_01370at 270.366 kb on + strand, within CSW01_01370at 270.366 kb on + strand, within CSW01_01370at 270.366 kb on + strand, within CSW01_01370at 270.367 kb on + strand, within CSW01_01370at 270.367 kb on + strand, within CSW01_01370at 270.367 kb on + strand, within CSW01_01370at 270.373 kb on + strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.374 kb on - strand, within CSW01_01370at 270.376 kb on + strand, within CSW01_01370at 270.376 kb on + strand, within CSW01_01370at 270.384 kb on - strand, within CSW01_01370at 270.384 kb on - strand, within CSW01_01370at 270.384 kb on - strand, within CSW01_01370at 270.398 kb on + strand, within CSW01_01370at 270.407 kb on - strand, within CSW01_01370at 270.451 kb on - strand, within CSW01_01370at 270.451 kb on - strand, within CSW01_01370at 270.479 kb on + strand, within CSW01_01370at 270.487 kb on - strand, within CSW01_01370at 270.487 kb on - strand, within CSW01_01370at 270.505 kb on + strand, within CSW01_01370at 270.538 kb on + strand, within CSW01_01370at 270.538 kb on + strand, within CSW01_01370at 270.546 kb on - strand, within CSW01_01370at 270.546 kb on - strand, within CSW01_01370at 270.554 kb on - strandat 270.554 kb on - strandat 270.615 kb on + strandat 270.652 kb on + strandat 270.652 kb on + strandat 270.657 kb on + strandat 270.666 kb on - strandat 270.677 kb on + strandat 270.677 kb on + strandat 270.717 kb on + strandat 270.717 kb on + strandat 270.738 kb on + strandat 270.756 kb on + strandat 270.775 kb on + strandat 270.785 kb on + strandat 270.804 kb on + strand, within CSW01_01375at 270.811 kb on + strand, within CSW01_01375at 270.820 kb on - strand, within CSW01_01375at 270.838 kb on + strand, within CSW01_01375at 270.844 kb on + strand, within CSW01_01375at 270.844 kb on + strand, within CSW01_01375at 270.859 kb on + strand, within CSW01_01375at 270.868 kb on + strand, within CSW01_01375at 270.883 kb on + strand, within CSW01_01375at 270.903 kb on - strand, within CSW01_01375at 270.919 kb on - strand, within CSW01_01375at 270.940 kb on - strand, within CSW01_01375at 270.966 kb on + strand, within CSW01_01375at 270.985 kb on + strand, within CSW01_01375at 270.993 kb on - strand, within CSW01_01375at 270.998 kb on - strand, within CSW01_01375at 270.998 kb on - strand, within CSW01_01375at 271.000 kb on + strand, within CSW01_01375at 271.008 kb on - strand, within CSW01_01375at 271.059 kb on + strand, within CSW01_01375at 271.084 kb on + strand, within CSW01_01375at 271.092 kb on - strand, within CSW01_01375at 271.149 kb on + strand, within CSW01_01375at 271.149 kb on + strand, within CSW01_01375at 271.149 kb on + strand, within CSW01_01375at 271.157 kb on - strand, within CSW01_01375at 271.157 kb on - strand, within CSW01_01375at 271.187 kb on - strand, within CSW01_01375at 271.200 kb on - strand, within CSW01_01375at 271.245 kb on + strandat 271.250 kb on - strandat 271.261 kb on - strandat 271.262 kb on + strandat 271.263 kb on - strandat 271.265 kb on + strandat 271.270 kb on - strandat 271.271 kb on - strandat 271.273 kb on - strandat 271.328 kb on + strandat 271.409 kb on - strand, within CSW01_01380at 271.421 kb on + strand, within CSW01_01380at 271.429 kb on - strand, within CSW01_01380at 271.443 kb on + strand, within CSW01_01380at 271.461 kb on - strand, within CSW01_01380at 271.506 kb on + strand, within CSW01_01380at 271.536 kb on + strand, within CSW01_01380at 271.544 kb on - strand, within CSW01_01380at 271.567 kb on + strand, within CSW01_01380at 271.567 kb on + strand, within CSW01_01380at 271.575 kb on - strand, within CSW01_01380at 271.622 kb on - strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.636 kb on + strand, within CSW01_01380at 271.644 kb on - strand, within CSW01_01380at 271.644 kb on - strand, within CSW01_01380at 271.644 kb on - strand, within CSW01_01380at 271.679 kb on - strand, within CSW01_01380at 271.686 kb on - strand, within CSW01_01380at 271.743 kb on - strand, within CSW01_01380at 271.768 kb on - strand, within CSW01_01380at 271.811 kb on - strand, within CSW01_01380at 271.857 kb on - strand, within CSW01_01380at 271.886 kb on + strand, within CSW01_01380at 271.898 kb on + strand, within CSW01_01380at 271.906 kb on - strand, within CSW01_01380at 271.919 kb on + strand, within CSW01_01380at 271.924 kb on + strand, within CSW01_01380at 271.924 kb on + strand, within CSW01_01380at 271.924 kb on + strand, within CSW01_01380at 271.932 kb on - strand, within CSW01_01380at 271.945 kb on + strand, within CSW01_01380at 271.945 kb on + strand, within CSW01_01380at 271.953 kb on - strand, within CSW01_01380at 271.966 kb on + strand, within CSW01_01380at 271.966 kb on + strand, within CSW01_01380at 271.966 kb on + strand, within CSW01_01380at 271.974 kb on - strand, within CSW01_01380at 272.000 kb on + strand, within CSW01_01380at 272.008 kb on - strand, within CSW01_01380at 272.008 kb on - strand, within CSW01_01380at 272.008 kb on - strand, within CSW01_01380at 272.056 kb on + strand, within CSW01_01380at 272.066 kb on + strand, within CSW01_01380at 272.066 kb on + strand, within CSW01_01380at 272.133 kb on - strandat 272.181 kb on - strandat 272.183 kb on - strandat 272.285 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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269,781 - CSW01_01370 0.28 +0.9
269,833 + CSW01_01370 0.32 -0.5
269,841 - CSW01_01370 0.33 +1.0
269,881 + CSW01_01370 0.36 -0.0
269,915 - CSW01_01370 0.39 +2.1
269,983 + CSW01_01370 0.44 -0.7
269,983 + CSW01_01370 0.44 -1.3
270,001 + CSW01_01370 0.46 -0.5
270,014 - CSW01_01370 0.47 -0.2
270,058 + CSW01_01370 0.50 -1.0
270,164 - CSW01_01370 0.59 +0.8
270,172 - CSW01_01370 0.59 -2.9
270,240 + CSW01_01370 0.65 -0.1
270,248 - CSW01_01370 0.65 +0.4
270,248 - CSW01_01370 0.65 +0.3
270,288 + CSW01_01370 0.69 +0.4
270,298 + CSW01_01370 0.69 -4.2
270,298 + CSW01_01370 0.69 -0.9
270,324 - CSW01_01370 0.72 +0.4
270,365 + CSW01_01370 0.75 -3.7
270,366 + CSW01_01370 0.75 +0.5
270,366 + CSW01_01370 0.75 -0.1
270,366 + CSW01_01370 0.75 +1.0
270,366 + CSW01_01370 0.75 -3.2
270,367 + CSW01_01370 0.75 -1.5
270,367 + CSW01_01370 0.75 +0.3
270,367 + CSW01_01370 0.75 -0.6
270,373 + CSW01_01370 0.76 -1.8
270,374 - CSW01_01370 0.76 -2.3
270,374 - CSW01_01370 0.76 -2.8
270,374 - CSW01_01370 0.76 -0.8
270,374 - CSW01_01370 0.76 -3.4
270,374 - CSW01_01370 0.76 -4.7
270,376 + CSW01_01370 0.76 -1.6
270,376 + CSW01_01370 0.76 +1.8
270,384 - CSW01_01370 0.76 +0.3
270,384 - CSW01_01370 0.76 -2.7
270,384 - CSW01_01370 0.76 +1.1
270,398 + CSW01_01370 0.78 -1.3
270,407 - CSW01_01370 0.78 +0.2
270,451 - CSW01_01370 0.82 +0.7
270,451 - CSW01_01370 0.82 +1.5
270,479 + CSW01_01370 0.84 -0.9
270,487 - CSW01_01370 0.85 +0.3
270,487 - CSW01_01370 0.85 -0.9
270,505 + CSW01_01370 0.86 +0.3
270,538 + CSW01_01370 0.89 -1.2
270,538 + CSW01_01370 0.89 +1.5
270,546 - CSW01_01370 0.90 -0.5
270,546 - CSW01_01370 0.90 +0.3
270,554 - -0.4
270,554 - -1.9
270,615 + -0.8
270,652 + +0.5
270,652 + -0.5
270,657 + -0.5
270,666 - +0.9
270,677 + +0.4
270,677 + -3.7
270,717 + -0.9
270,717 + +1.0
270,738 + -0.3
270,756 + -1.1
270,775 + +0.6
270,785 + -1.0
270,804 + CSW01_01375 0.13 -0.4
270,811 + CSW01_01375 0.14 +0.4
270,820 - CSW01_01375 0.16 +0.2
270,838 + CSW01_01375 0.19 -0.2
270,844 + CSW01_01375 0.20 +0.2
270,844 + CSW01_01375 0.20 -0.6
270,859 + CSW01_01375 0.23 +0.2
270,868 + CSW01_01375 0.24 -1.3
270,883 + CSW01_01375 0.27 +0.2
270,903 - CSW01_01375 0.30 +1.4
270,919 - CSW01_01375 0.33 -0.9
270,940 - CSW01_01375 0.37 +0.4
270,966 + CSW01_01375 0.41 -0.7
270,985 + CSW01_01375 0.45 -0.3
270,993 - CSW01_01375 0.46 -0.5
270,998 - CSW01_01375 0.47 -1.8
270,998 - CSW01_01375 0.47 +1.0
271,000 + CSW01_01375 0.47 +0.7
271,008 - CSW01_01375 0.49 -2.7
271,059 + CSW01_01375 0.57 +1.5
271,084 + CSW01_01375 0.62 -0.5
271,092 - CSW01_01375 0.63 -0.1
271,149 + CSW01_01375 0.73 -1.7
271,149 + CSW01_01375 0.73 +1.5
271,149 + CSW01_01375 0.73 +0.7
271,157 - CSW01_01375 0.75 +1.0
271,157 - CSW01_01375 0.75 +0.5
271,187 - CSW01_01375 0.80 -2.0
271,200 - CSW01_01375 0.82 -0.1
271,245 + -2.8
271,250 - +1.6
271,261 - -2.0
271,262 + +1.6
271,263 - -3.1
271,265 + +1.9
271,270 - -0.4
271,271 - -2.8
271,273 - -2.4
271,328 + +0.7
271,409 - CSW01_01380 0.12 -0.8
271,421 + CSW01_01380 0.13 +0.6
271,429 - CSW01_01380 0.14 -2.2
271,443 + CSW01_01380 0.15 +0.8
271,461 - CSW01_01380 0.17 +0.6
271,506 + CSW01_01380 0.22 +1.6
271,536 + CSW01_01380 0.25 +0.9
271,544 - CSW01_01380 0.26 +0.2
271,567 + CSW01_01380 0.29 -1.6
271,567 + CSW01_01380 0.29 +0.7
271,575 - CSW01_01380 0.30 +0.4
271,622 - CSW01_01380 0.35 +0.8
271,636 + CSW01_01380 0.36 +0.0
271,636 + CSW01_01380 0.36 -2.8
271,636 + CSW01_01380 0.36 +1.4
271,636 + CSW01_01380 0.36 +1.9
271,636 + CSW01_01380 0.36 +0.7
271,644 - CSW01_01380 0.37 -2.7
271,644 - CSW01_01380 0.37 +0.5
271,644 - CSW01_01380 0.37 +0.2
271,679 - CSW01_01380 0.41 -2.4
271,686 - CSW01_01380 0.42 +0.6
271,743 - CSW01_01380 0.48 +1.1
271,768 - CSW01_01380 0.50 -1.2
271,811 - CSW01_01380 0.55 -0.4
271,857 - CSW01_01380 0.60 +0.5
271,886 + CSW01_01380 0.63 +1.3
271,898 + CSW01_01380 0.65 +1.5
271,906 - CSW01_01380 0.65 +0.4
271,919 + CSW01_01380 0.67 -2.5
271,924 + CSW01_01380 0.67 -1.8
271,924 + CSW01_01380 0.67 -2.3
271,924 + CSW01_01380 0.67 -0.8
271,932 - CSW01_01380 0.68 +0.9
271,945 + CSW01_01380 0.70 -0.3
271,945 + CSW01_01380 0.70 -2.8
271,953 - CSW01_01380 0.70 -0.4
271,966 + CSW01_01380 0.72 -2.1
271,966 + CSW01_01380 0.72 +0.5
271,966 + CSW01_01380 0.72 -0.6
271,974 - CSW01_01380 0.73 +0.3
272,000 + CSW01_01380 0.76 -0.1
272,008 - CSW01_01380 0.76 -1.6
272,008 - CSW01_01380 0.76 +0.3
272,008 - CSW01_01380 0.76 -3.2
272,056 + CSW01_01380 0.82 -1.3
272,066 + CSW01_01380 0.83 -0.4
272,066 + CSW01_01380 0.83 -0.0
272,133 - -0.9
272,181 - +0.2
272,183 - -2.0
272,285 + -1.1

Or see this region's nucleotide sequence