Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01340

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01335 and CSW01_01340 are separated by 177 nucleotidesCSW01_01340 and CSW01_01345 are separated by 34 nucleotides CSW01_01335: CSW01_01335 - ISAs1 family transposase, at 260,794 to 261,921 _01335 CSW01_01340: CSW01_01340 - RfbT protein, at 262,099 to 262,959 _01340 CSW01_01345: CSW01_01345 - glycosyl transferase family 1, at 262,994 to 264,106 _01345 Position (kb) 262 263Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 261.148 kb on - strand, within CSW01_01335at 261.151 kb on - strand, within CSW01_01335at 261.196 kb on - strand, within CSW01_01335at 261.286 kb on + strand, within CSW01_01335at 261.286 kb on + strand, within CSW01_01335at 261.294 kb on - strand, within CSW01_01335at 261.393 kb on + strand, within CSW01_01335at 261.617 kb on - strand, within CSW01_01335at 261.667 kb on + strand, within CSW01_01335at 261.692 kb on + strand, within CSW01_01335at 261.700 kb on - strand, within CSW01_01335at 261.705 kb on - strand, within CSW01_01335at 261.711 kb on - strand, within CSW01_01335at 261.712 kb on - strand, within CSW01_01335at 261.764 kb on + strand, within CSW01_01335at 261.771 kb on + strand, within CSW01_01335at 261.778 kb on + strand, within CSW01_01335at 261.783 kb on + strand, within CSW01_01335at 261.837 kb on + strandat 261.837 kb on + strandat 261.870 kb on - strandat 261.896 kb on - strandat 261.911 kb on + strandat 261.912 kb on - strandat 261.931 kb on - strandat 261.954 kb on - strandat 262.016 kb on + strandat 262.016 kb on + strandat 262.146 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.161 kb on + strandat 262.169 kb on - strandat 262.169 kb on - strandat 262.169 kb on - strandat 262.250 kb on + strand, within CSW01_01340at 262.257 kb on + strand, within CSW01_01340at 262.258 kb on - strand, within CSW01_01340at 262.258 kb on - strand, within CSW01_01340at 262.282 kb on + strand, within CSW01_01340at 262.285 kb on - strand, within CSW01_01340at 262.299 kb on + strand, within CSW01_01340at 262.307 kb on - strand, within CSW01_01340at 262.340 kb on - strand, within CSW01_01340at 262.343 kb on + strand, within CSW01_01340at 262.365 kb on + strand, within CSW01_01340at 262.373 kb on - strand, within CSW01_01340at 262.373 kb on - strand, within CSW01_01340at 262.373 kb on - strand, within CSW01_01340at 262.405 kb on - strand, within CSW01_01340at 262.459 kb on - strand, within CSW01_01340at 262.506 kb on - strand, within CSW01_01340at 262.554 kb on - strand, within CSW01_01340at 262.657 kb on - strand, within CSW01_01340at 262.795 kb on + strand, within CSW01_01340at 262.798 kb on - strand, within CSW01_01340at 262.891 kb on + strandat 263.012 kb on - strandat 263.014 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.026 kb on + strandat 263.027 kb on - strandat 263.034 kb on - strandat 263.034 kb on - strandat 263.034 kb on - strandat 263.034 kb on - strandat 263.034 kb on - strandat 263.034 kb on - strandat 263.034 kb on - strandat 263.034 kb on - strandat 263.036 kb on + strandat 263.036 kb on + strandat 263.036 kb on + strandat 263.036 kb on + strandat 263.036 kb on + strandat 263.036 kb on + strandat 263.036 kb on + strandat 263.039 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.044 kb on - strandat 263.049 kb on - strandat 263.056 kb on - strandat 263.056 kb on - strandat 263.056 kb on - strandat 263.056 kb on - strandat 263.056 kb on - strandat 263.056 kb on - strandat 263.056 kb on - strandat 263.066 kb on - strandat 263.110 kb on + strand, within CSW01_01345at 263.110 kb on + strand, within CSW01_01345at 263.110 kb on + strand, within CSW01_01345at 263.118 kb on - strand, within CSW01_01345at 263.149 kb on + strand, within CSW01_01345at 263.157 kb on - strand, within CSW01_01345at 263.158 kb on - strand, within CSW01_01345at 263.174 kb on + strand, within CSW01_01345at 263.174 kb on + strand, within CSW01_01345at 263.175 kb on + strand, within CSW01_01345at 263.175 kb on + strand, within CSW01_01345at 263.181 kb on - strand, within CSW01_01345at 263.181 kb on - strand, within CSW01_01345at 263.182 kb on - strand, within CSW01_01345at 263.182 kb on - strand, within CSW01_01345at 263.182 kb on - strand, within CSW01_01345at 263.182 kb on - strand, within CSW01_01345at 263.182 kb on - strand, within CSW01_01345at 263.190 kb on + strand, within CSW01_01345at 263.190 kb on + strand, within CSW01_01345at 263.207 kb on + strand, within CSW01_01345at 263.207 kb on + strand, within CSW01_01345at 263.207 kb on + strand, within CSW01_01345at 263.207 kb on + strand, within CSW01_01345at 263.207 kb on + strand, within CSW01_01345at 263.207 kb on + strand, within CSW01_01345at 263.207 kb on + strand, within CSW01_01345at 263.207 kb on + strand, within CSW01_01345at 263.207 kb on + strand, within CSW01_01345at 263.215 kb on - strand, within CSW01_01345at 263.215 kb on - strand, within CSW01_01345at 263.215 kb on - strand, within CSW01_01345at 263.215 kb on - strand, within CSW01_01345at 263.215 kb on - strand, within CSW01_01345at 263.215 kb on - strand, within CSW01_01345at 263.241 kb on + strand, within CSW01_01345at 263.242 kb on - strand, within CSW01_01345at 263.249 kb on - strand, within CSW01_01345at 263.252 kb on + strand, within CSW01_01345at 263.257 kb on - strand, within CSW01_01345at 263.257 kb on - strand, within CSW01_01345at 263.257 kb on - strand, within CSW01_01345at 263.257 kb on - strand, within CSW01_01345at 263.260 kb on - strand, within CSW01_01345at 263.276 kb on + strand, within CSW01_01345at 263.276 kb on + strand, within CSW01_01345at 263.277 kb on - strand, within CSW01_01345at 263.284 kb on + strand, within CSW01_01345at 263.284 kb on + strand, within CSW01_01345at 263.284 kb on - strand, within CSW01_01345at 263.284 kb on - strand, within CSW01_01345at 263.296 kb on + strand, within CSW01_01345at 263.296 kb on + strand, within CSW01_01345at 263.299 kb on - strand, within CSW01_01345at 263.309 kb on + strand, within CSW01_01345at 263.370 kb on + strand, within CSW01_01345at 263.370 kb on + strand, within CSW01_01345at 263.370 kb on + strand, within CSW01_01345at 263.378 kb on - strand, within CSW01_01345at 263.378 kb on - strand, within CSW01_01345at 263.400 kb on + strand, within CSW01_01345at 263.408 kb on - strand, within CSW01_01345at 263.408 kb on - strand, within CSW01_01345at 263.413 kb on + strand, within CSW01_01345at 263.421 kb on - strand, within CSW01_01345at 263.486 kb on + strand, within CSW01_01345at 263.486 kb on + strand, within CSW01_01345at 263.486 kb on + strand, within CSW01_01345at 263.494 kb on - strand, within CSW01_01345at 263.494 kb on - strand, within CSW01_01345at 263.494 kb on - strand, within CSW01_01345at 263.494 kb on - strand, within CSW01_01345at 263.494 kb on - strand, within CSW01_01345at 263.494 kb on - strand, within CSW01_01345at 263.583 kb on + strand, within CSW01_01345at 263.589 kb on + strand, within CSW01_01345at 263.659 kb on + strand, within CSW01_01345at 263.744 kb on + strand, within CSW01_01345at 263.803 kb on - strand, within CSW01_01345at 263.821 kb on - strand, within CSW01_01345at 263.824 kb on + strand, within CSW01_01345at 263.824 kb on + strand, within CSW01_01345at 263.829 kb on + strand, within CSW01_01345at 263.837 kb on - strand, within CSW01_01345at 263.837 kb on - strand, within CSW01_01345at 263.837 kb on - strand, within CSW01_01345at 263.837 kb on - strand, within CSW01_01345at 263.838 kb on - strand, within CSW01_01345at 263.842 kb on + strand, within CSW01_01345at 263.842 kb on + strand, within CSW01_01345at 263.842 kb on + strand, within CSW01_01345at 263.842 kb on + strand, within CSW01_01345at 263.843 kb on + strand, within CSW01_01345at 263.850 kb on - strand, within CSW01_01345at 263.851 kb on - strand, within CSW01_01345at 263.851 kb on - strand, within CSW01_01345

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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261,148 - CSW01_01335 0.31 -2.2
261,151 - CSW01_01335 0.32 -2.5
261,196 - CSW01_01335 0.36 -1.9
261,286 + CSW01_01335 0.44 -1.5
261,286 + CSW01_01335 0.44 +0.3
261,294 - CSW01_01335 0.44 -3.1
261,393 + CSW01_01335 0.53 +0.1
261,617 - CSW01_01335 0.73 +0.3
261,667 + CSW01_01335 0.77 +1.6
261,692 + CSW01_01335 0.80 -2.3
261,700 - CSW01_01335 0.80 +1.2
261,705 - CSW01_01335 0.81 +1.3
261,711 - CSW01_01335 0.81 -2.5
261,712 - CSW01_01335 0.81 +1.7
261,764 + CSW01_01335 0.86 -1.5
261,771 + CSW01_01335 0.87 -1.7
261,778 + CSW01_01335 0.87 -0.0
261,783 + CSW01_01335 0.88 +0.5
261,837 + -1.5
261,837 + -0.0
261,870 - -1.0
261,896 - -4.6
261,911 + +1.0
261,912 - +1.5
261,931 - +1.4
261,954 - -2.6
262,016 + +0.8
262,016 + +1.7
262,146 + -3.8
262,161 + -0.2
262,161 + -0.6
262,161 + -2.3
262,161 + -0.6
262,161 + +0.1
262,161 + -3.4
262,161 + -1.2
262,161 + +0.3
262,169 - +1.0
262,169 - +1.2
262,169 - +1.0
262,250 + CSW01_01340 0.18 +0.8
262,257 + CSW01_01340 0.18 +0.7
262,258 - CSW01_01340 0.18 +0.2
262,258 - CSW01_01340 0.18 +1.7
262,282 + CSW01_01340 0.21 -1.7
262,285 - CSW01_01340 0.22 -0.9
262,299 + CSW01_01340 0.23 -1.3
262,307 - CSW01_01340 0.24 -1.2
262,340 - CSW01_01340 0.28 +0.9
262,343 + CSW01_01340 0.28 +1.1
262,365 + CSW01_01340 0.31 -0.5
262,373 - CSW01_01340 0.32 +1.0
262,373 - CSW01_01340 0.32 +1.6
262,373 - CSW01_01340 0.32 -1.8
262,405 - CSW01_01340 0.36 -3.5
262,459 - CSW01_01340 0.42 -0.8
262,506 - CSW01_01340 0.47 -0.3
262,554 - CSW01_01340 0.53 -0.2
262,657 - CSW01_01340 0.65 +0.3
262,795 + CSW01_01340 0.81 -0.7
262,798 - CSW01_01340 0.81 -0.3
262,891 + -0.7
263,012 - +5.4
263,014 + +4.7
263,026 + +4.8
263,026 + +4.9
263,026 + +5.1
263,026 + +4.5
263,026 + +5.4
263,026 + +4.7
263,026 + +4.8
263,026 + +4.5
263,026 + +5.0
263,026 + +4.2
263,026 + +5.2
263,027 - +5.0
263,034 - +5.1
263,034 - +5.0
263,034 - +4.9
263,034 - +4.9
263,034 - +5.6
263,034 - +5.0
263,034 - +4.3
263,034 - +4.7
263,036 + +5.5
263,036 + +5.1
263,036 + +5.1
263,036 + +5.0
263,036 + +5.0
263,036 + +4.8
263,036 + +5.4
263,039 - +5.0
263,044 - +4.3
263,044 - +5.4
263,044 - +4.8
263,044 - +4.8
263,044 - +5.5
263,044 - +4.9
263,044 - +4.9
263,044 - +4.9
263,044 - +4.7
263,044 - +5.2
263,049 - +5.2
263,056 - +5.0
263,056 - +5.5
263,056 - +5.3
263,056 - +5.3
263,056 - +4.9
263,056 - +4.7
263,056 - +5.3
263,066 - +5.7
263,110 + CSW01_01345 0.10 +5.2
263,110 + CSW01_01345 0.10 +4.8
263,110 + CSW01_01345 0.10 +4.9
263,118 - CSW01_01345 0.11 +5.3
263,149 + CSW01_01345 0.14 +5.1
263,157 - CSW01_01345 0.15 +4.7
263,158 - CSW01_01345 0.15 +5.5
263,174 + CSW01_01345 0.16 +6.2
263,174 + CSW01_01345 0.16 +4.7
263,175 + CSW01_01345 0.16 +5.0
263,175 + CSW01_01345 0.16 +5.4
263,181 - CSW01_01345 0.17 +5.1
263,181 - CSW01_01345 0.17 +5.3
263,182 - CSW01_01345 0.17 +5.2
263,182 - CSW01_01345 0.17 +4.5
263,182 - CSW01_01345 0.17 +4.7
263,182 - CSW01_01345 0.17 +4.9
263,182 - CSW01_01345 0.17 +5.0
263,190 + CSW01_01345 0.18 +4.8
263,190 + CSW01_01345 0.18 +5.3
263,207 + CSW01_01345 0.19 +4.3
263,207 + CSW01_01345 0.19 +4.8
263,207 + CSW01_01345 0.19 +4.3
263,207 + CSW01_01345 0.19 +5.5
263,207 + CSW01_01345 0.19 +4.5
263,207 + CSW01_01345 0.19 +4.7
263,207 + CSW01_01345 0.19 +4.9
263,207 + CSW01_01345 0.19 +4.7
263,207 + CSW01_01345 0.19 +4.5
263,215 - CSW01_01345 0.20 +4.7
263,215 - CSW01_01345 0.20 +4.9
263,215 - CSW01_01345 0.20 +5.3
263,215 - CSW01_01345 0.20 +5.2
263,215 - CSW01_01345 0.20 +4.8
263,215 - CSW01_01345 0.20 +5.2
263,241 + CSW01_01345 0.22 +5.6
263,242 - CSW01_01345 0.22 +5.5
263,249 - CSW01_01345 0.23 +4.7
263,252 + CSW01_01345 0.23 +5.0
263,257 - CSW01_01345 0.24 +5.3
263,257 - CSW01_01345 0.24 +5.2
263,257 - CSW01_01345 0.24 +5.2
263,257 - CSW01_01345 0.24 +4.9
263,260 - CSW01_01345 0.24 +4.9
263,276 + CSW01_01345 0.25 +4.7
263,276 + CSW01_01345 0.25 +5.1
263,277 - CSW01_01345 0.25 +5.4
263,284 + CSW01_01345 0.26 +4.5
263,284 + CSW01_01345 0.26 +4.4
263,284 - CSW01_01345 0.26 +5.4
263,284 - CSW01_01345 0.26 +4.7
263,296 + CSW01_01345 0.27 +5.0
263,296 + CSW01_01345 0.27 +5.2
263,299 - CSW01_01345 0.27 +5.1
263,309 + CSW01_01345 0.28 +5.1
263,370 + CSW01_01345 0.34 +5.3
263,370 + CSW01_01345 0.34 +5.1
263,370 + CSW01_01345 0.34 +5.0
263,378 - CSW01_01345 0.35 +4.8
263,378 - CSW01_01345 0.35 +4.8
263,400 + CSW01_01345 0.36 +4.6
263,408 - CSW01_01345 0.37 +5.0
263,408 - CSW01_01345 0.37 +4.7
263,413 + CSW01_01345 0.38 +4.8
263,421 - CSW01_01345 0.38 +4.8
263,486 + CSW01_01345 0.44 +5.0
263,486 + CSW01_01345 0.44 +4.8
263,486 + CSW01_01345 0.44 +4.7
263,494 - CSW01_01345 0.45 +4.8
263,494 - CSW01_01345 0.45 +5.3
263,494 - CSW01_01345 0.45 +5.5
263,494 - CSW01_01345 0.45 +5.0
263,494 - CSW01_01345 0.45 +4.6
263,494 - CSW01_01345 0.45 +4.7
263,583 + CSW01_01345 0.53 +4.8
263,589 + CSW01_01345 0.53 +4.8
263,659 + CSW01_01345 0.60 +5.8
263,744 + CSW01_01345 0.67 +4.4
263,803 - CSW01_01345 0.73 +5.0
263,821 - CSW01_01345 0.74 +4.4
263,824 + CSW01_01345 0.75 +4.8
263,824 + CSW01_01345 0.75 +4.7
263,829 + CSW01_01345 0.75 +4.7
263,837 - CSW01_01345 0.76 +4.8
263,837 - CSW01_01345 0.76 +4.5
263,837 - CSW01_01345 0.76 +5.1
263,837 - CSW01_01345 0.76 +4.7
263,838 - CSW01_01345 0.76 +4.6
263,842 + CSW01_01345 0.76 +4.8
263,842 + CSW01_01345 0.76 +4.8
263,842 + CSW01_01345 0.76 +4.9
263,842 + CSW01_01345 0.76 +4.9
263,843 + CSW01_01345 0.76 +5.5
263,850 - CSW01_01345 0.77 +4.8
263,851 - CSW01_01345 0.77 +4.8
263,851 - CSW01_01345 0.77 +4.0

Or see this region's nucleotide sequence