Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01100

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01090 and CSW01_01095 overlap by 19 nucleotidesCSW01_01095 and CSW01_01100 are separated by 30 nucleotidesCSW01_01100 and CSW01_01105 are separated by 106 nucleotidesCSW01_01105 and CSW01_01110 are separated by 65 nucleotides CSW01_01090: CSW01_01090 - hypothetical protein, at 213,332 to 213,523 _01090 CSW01_01095: CSW01_01095 - N-acetylmuramic acid 6-phosphate etherase, at 213,505 to 214,422 _01095 CSW01_01100: CSW01_01100 - PTS N-acetylmuramic acid EIIBC component, at 214,453 to 215,898 _01100 CSW01_01105: CSW01_01105 - hypothetical protein, at 216,005 to 216,493 _01105 CSW01_01110: CSW01_01110 - YicC family protein, at 216,559 to 217,425 _01110 Position (kb) 214 215 216Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 213.523 kb on - strandat 213.523 kb on - strandat 213.554 kb on + strandat 213.562 kb on - strandat 213.562 kb on - strandat 213.562 kb on - strandat 213.576 kb on + strandat 213.576 kb on + strandat 213.695 kb on - strand, within CSW01_01095at 213.762 kb on + strand, within CSW01_01095at 213.792 kb on + strand, within CSW01_01095at 213.792 kb on - strand, within CSW01_01095at 213.802 kb on + strand, within CSW01_01095at 213.814 kb on + strand, within CSW01_01095at 213.827 kb on - strand, within CSW01_01095at 213.878 kb on + strand, within CSW01_01095at 213.891 kb on - strand, within CSW01_01095at 213.925 kb on + strand, within CSW01_01095at 213.929 kb on - strand, within CSW01_01095at 213.930 kb on + strand, within CSW01_01095at 213.950 kb on + strand, within CSW01_01095at 213.973 kb on + strand, within CSW01_01095at 213.974 kb on - strand, within CSW01_01095at 213.981 kb on - strand, within CSW01_01095at 213.990 kb on + strand, within CSW01_01095at 213.994 kb on + strand, within CSW01_01095at 213.996 kb on - strand, within CSW01_01095at 214.002 kb on - strand, within CSW01_01095at 214.017 kb on - strand, within CSW01_01095at 214.027 kb on - strand, within CSW01_01095at 214.052 kb on - strand, within CSW01_01095at 214.052 kb on - strand, within CSW01_01095at 214.180 kb on + strand, within CSW01_01095at 214.188 kb on - strand, within CSW01_01095at 214.188 kb on - strand, within CSW01_01095at 214.203 kb on + strand, within CSW01_01095at 214.215 kb on - strand, within CSW01_01095at 214.245 kb on + strand, within CSW01_01095at 214.264 kb on + strand, within CSW01_01095at 214.314 kb on + strand, within CSW01_01095at 214.314 kb on + strand, within CSW01_01095at 214.322 kb on - strand, within CSW01_01095at 214.347 kb on + strandat 214.347 kb on + strandat 214.352 kb on + strandat 214.355 kb on - strandat 214.355 kb on - strandat 214.355 kb on - strandat 214.357 kb on + strandat 214.365 kb on - strandat 214.365 kb on - strandat 214.383 kb on + strandat 214.390 kb on + strandat 214.390 kb on + strandat 214.390 kb on + strandat 214.391 kb on - strandat 214.398 kb on - strandat 214.398 kb on - strandat 214.398 kb on - strandat 214.440 kb on - strandat 214.486 kb on + strandat 214.558 kb on - strandat 214.628 kb on - strand, within CSW01_01100at 214.628 kb on - strand, within CSW01_01100at 214.721 kb on + strand, within CSW01_01100at 214.729 kb on - strand, within CSW01_01100at 214.739 kb on - strand, within CSW01_01100at 214.739 kb on - strand, within CSW01_01100at 214.809 kb on - strand, within CSW01_01100at 214.878 kb on + strand, within CSW01_01100at 214.883 kb on - strand, within CSW01_01100at 214.886 kb on - strand, within CSW01_01100at 214.902 kb on + strand, within CSW01_01100at 214.915 kb on + strand, within CSW01_01100at 214.924 kb on - strand, within CSW01_01100at 214.932 kb on + strand, within CSW01_01100at 214.971 kb on - strand, within CSW01_01100at 215.041 kb on - strand, within CSW01_01100at 215.046 kb on - strand, within CSW01_01100at 215.078 kb on + strand, within CSW01_01100at 215.086 kb on - strand, within CSW01_01100at 215.116 kb on - strand, within CSW01_01100at 215.138 kb on + strand, within CSW01_01100at 215.224 kb on - strand, within CSW01_01100at 215.255 kb on - strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.409 kb on + strand, within CSW01_01100at 215.436 kb on + strand, within CSW01_01100at 215.465 kb on + strand, within CSW01_01100at 215.465 kb on + strand, within CSW01_01100at 215.472 kb on - strand, within CSW01_01100at 215.473 kb on - strand, within CSW01_01100at 215.473 kb on - strand, within CSW01_01100at 215.520 kb on - strand, within CSW01_01100at 215.619 kb on + strand, within CSW01_01100at 215.740 kb on + strand, within CSW01_01100at 215.740 kb on + strand, within CSW01_01100at 215.758 kb on - strandat 215.778 kb on - strandat 215.837 kb on + strandat 215.845 kb on - strandat 215.851 kb on - strandat 215.860 kb on + strandat 215.892 kb on + strandat 215.907 kb on + strandat 215.920 kb on - strandat 215.936 kb on - strandat 215.954 kb on + strandat 216.017 kb on + strandat 216.104 kb on - strand, within CSW01_01105at 216.124 kb on - strand, within CSW01_01105at 216.203 kb on - strand, within CSW01_01105at 216.203 kb on - strand, within CSW01_01105at 216.213 kb on + strand, within CSW01_01105at 216.283 kb on + strand, within CSW01_01105at 216.291 kb on - strand, within CSW01_01105at 216.320 kb on + strand, within CSW01_01105at 216.362 kb on + strand, within CSW01_01105at 216.421 kb on + strand, within CSW01_01105at 216.421 kb on + strand, within CSW01_01105at 216.429 kb on - strand, within CSW01_01105at 216.429 kb on - strand, within CSW01_01105at 216.445 kb on + strandat 216.445 kb on + strandat 216.513 kb on + strandat 216.549 kb on + strandat 216.550 kb on + strandat 216.594 kb on - strandat 216.636 kb on - strandat 216.671 kb on + strand, within CSW01_01110at 216.679 kb on - strand, within CSW01_01110at 216.681 kb on - strand, within CSW01_01110at 216.766 kb on + strand, within CSW01_01110at 216.774 kb on - strand, within CSW01_01110at 216.813 kb on - strand, within CSW01_01110at 216.819 kb on - strand, within CSW01_01110at 216.845 kb on - strand, within CSW01_01110

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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213,523 - -0.1
213,523 - +1.2
213,554 + -1.8
213,562 - +0.6
213,562 - +0.4
213,562 - -0.5
213,576 + +0.3
213,576 + +0.5
213,695 - CSW01_01095 0.21 +0.7
213,762 + CSW01_01095 0.28 -0.1
213,792 + CSW01_01095 0.31 +1.1
213,792 - CSW01_01095 0.31 -2.9
213,802 + CSW01_01095 0.32 -2.4
213,814 + CSW01_01095 0.34 +0.5
213,827 - CSW01_01095 0.35 -1.3
213,878 + CSW01_01095 0.41 -1.0
213,891 - CSW01_01095 0.42 -0.2
213,925 + CSW01_01095 0.46 -0.4
213,929 - CSW01_01095 0.46 +0.2
213,930 + CSW01_01095 0.46 -2.6
213,950 + CSW01_01095 0.48 +0.9
213,973 + CSW01_01095 0.51 +0.7
213,974 - CSW01_01095 0.51 +1.3
213,981 - CSW01_01095 0.52 -0.3
213,990 + CSW01_01095 0.53 -1.6
213,994 + CSW01_01095 0.53 -2.7
213,996 - CSW01_01095 0.53 -1.8
214,002 - CSW01_01095 0.54 +1.1
214,017 - CSW01_01095 0.56 -3.7
214,027 - CSW01_01095 0.57 -0.0
214,052 - CSW01_01095 0.60 -2.3
214,052 - CSW01_01095 0.60 +0.2
214,180 + CSW01_01095 0.74 -3.0
214,188 - CSW01_01095 0.74 +0.8
214,188 - CSW01_01095 0.74 -0.3
214,203 + CSW01_01095 0.76 +1.3
214,215 - CSW01_01095 0.77 +0.5
214,245 + CSW01_01095 0.81 +0.5
214,264 + CSW01_01095 0.83 +0.7
214,314 + CSW01_01095 0.88 -3.0
214,314 + CSW01_01095 0.88 +0.4
214,322 - CSW01_01095 0.89 -0.9
214,347 + -0.9
214,347 + +0.8
214,352 + -2.5
214,355 - +0.9
214,355 - +0.6
214,355 - -0.4
214,357 + +0.7
214,365 - +1.0
214,365 - -0.7
214,383 + +0.1
214,390 + -0.8
214,390 + -0.4
214,390 + -1.1
214,391 - +1.2
214,398 - +0.3
214,398 - +1.0
214,398 - +0.5
214,440 - +0.9
214,486 + +1.1
214,558 - -2.1
214,628 - CSW01_01100 0.12 -0.8
214,628 - CSW01_01100 0.12 -3.3
214,721 + CSW01_01100 0.19 -2.9
214,729 - CSW01_01100 0.19 +1.1
214,739 - CSW01_01100 0.20 +0.1
214,739 - CSW01_01100 0.20 -1.2
214,809 - CSW01_01100 0.25 -2.8
214,878 + CSW01_01100 0.29 +1.4
214,883 - CSW01_01100 0.30 +0.6
214,886 - CSW01_01100 0.30 +0.6
214,902 + CSW01_01100 0.31 -0.2
214,915 + CSW01_01100 0.32 +0.6
214,924 - CSW01_01100 0.33 -0.3
214,932 + CSW01_01100 0.33 -2.0
214,971 - CSW01_01100 0.36 -3.1
215,041 - CSW01_01100 0.41 -0.5
215,046 - CSW01_01100 0.41 -2.6
215,078 + CSW01_01100 0.43 +0.6
215,086 - CSW01_01100 0.44 +0.5
215,116 - CSW01_01100 0.46 -1.0
215,138 + CSW01_01100 0.47 -2.0
215,224 - CSW01_01100 0.53 -1.6
215,255 - CSW01_01100 0.55 -0.0
215,319 + CSW01_01100 0.60 +0.3
215,319 + CSW01_01100 0.60 -2.9
215,319 + CSW01_01100 0.60 +0.9
215,319 + CSW01_01100 0.60 +0.1
215,319 + CSW01_01100 0.60 -2.3
215,319 + CSW01_01100 0.60 -0.3
215,319 + CSW01_01100 0.60 +0.4
215,319 + CSW01_01100 0.60 +0.1
215,327 - CSW01_01100 0.60 +1.3
215,327 - CSW01_01100 0.60 -0.7
215,327 - CSW01_01100 0.60 +0.4
215,327 - CSW01_01100 0.60 +0.2
215,327 - CSW01_01100 0.60 -1.0
215,327 - CSW01_01100 0.60 -1.8
215,327 - CSW01_01100 0.60 -2.8
215,327 - CSW01_01100 0.60 -0.4
215,327 - CSW01_01100 0.60 -2.4
215,409 + CSW01_01100 0.66 -0.2
215,436 + CSW01_01100 0.68 +1.1
215,465 + CSW01_01100 0.70 -0.8
215,465 + CSW01_01100 0.70 +0.3
215,472 - CSW01_01100 0.70 +1.1
215,473 - CSW01_01100 0.71 -2.6
215,473 - CSW01_01100 0.71 -0.6
215,520 - CSW01_01100 0.74 +0.5
215,619 + CSW01_01100 0.81 -3.7
215,740 + CSW01_01100 0.89 -2.1
215,740 + CSW01_01100 0.89 -0.6
215,758 - -2.8
215,778 - -1.5
215,837 + -2.0
215,845 - -2.5
215,851 - +1.0
215,860 + +0.2
215,892 + +0.6
215,907 + -4.0
215,920 - +0.7
215,936 - -1.9
215,954 + +0.5
216,017 + +0.4
216,104 - CSW01_01105 0.20 -4.1
216,124 - CSW01_01105 0.24 -0.4
216,203 - CSW01_01105 0.40 -3.7
216,203 - CSW01_01105 0.40 -1.3
216,213 + CSW01_01105 0.43 -3.7
216,283 + CSW01_01105 0.57 +0.5
216,291 - CSW01_01105 0.58 +0.4
216,320 + CSW01_01105 0.64 +0.3
216,362 + CSW01_01105 0.73 +0.9
216,421 + CSW01_01105 0.85 +0.4
216,421 + CSW01_01105 0.85 -0.0
216,429 - CSW01_01105 0.87 -1.2
216,429 - CSW01_01105 0.87 +1.8
216,445 + -0.8
216,445 + -0.9
216,513 + -3.1
216,549 + -0.3
216,550 + -0.1
216,594 - +1.0
216,636 - +0.2
216,671 + CSW01_01110 0.13 -0.1
216,679 - CSW01_01110 0.14 -3.6
216,681 - CSW01_01110 0.14 -0.3
216,766 + CSW01_01110 0.24 -0.5
216,774 - CSW01_01110 0.25 +0.1
216,813 - CSW01_01110 0.29 -3.0
216,819 - CSW01_01110 0.30 -0.5
216,845 - CSW01_01110 0.33 -2.0

Or see this region's nucleotide sequence