Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00945

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00935 and CSW01_00940 are separated by 66 nucleotidesCSW01_00940 and CSW01_00945 are separated by 208 nucleotidesCSW01_00945 and CSW01_00950 are separated by 102 nucleotides CSW01_00935: CSW01_00935 - deoxycytidylate deaminase, at 175,344 to 176,942 _00935 CSW01_00940: CSW01_00940 - hypothetical protein, at 177,009 to 177,242 _00940 CSW01_00945: CSW01_00945 - XRE family transcriptional regulator, at 177,451 to 177,759 _00945 CSW01_00950: CSW01_00950 - transcriptional regulator, at 177,862 to 178,425 _00950 Position (kb) 177 178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 176.454 kb on - strand, within CSW01_00935at 176.455 kb on - strand, within CSW01_00935at 176.500 kb on + strand, within CSW01_00935at 176.547 kb on + strand, within CSW01_00935at 176.562 kb on - strand, within CSW01_00935at 176.601 kb on + strand, within CSW01_00935at 176.609 kb on + strand, within CSW01_00935at 176.612 kb on - strand, within CSW01_00935at 176.646 kb on + strand, within CSW01_00935at 176.654 kb on - strand, within CSW01_00935at 176.661 kb on - strand, within CSW01_00935at 176.663 kb on - strand, within CSW01_00935at 176.663 kb on - strand, within CSW01_00935at 176.690 kb on - strand, within CSW01_00935at 176.711 kb on - strand, within CSW01_00935at 176.778 kb on + strand, within CSW01_00935at 176.778 kb on + strand, within CSW01_00935at 176.786 kb on - strandat 176.786 kb on - strandat 176.792 kb on + strandat 176.797 kb on + strandat 176.797 kb on + strandat 176.800 kb on + strandat 176.805 kb on - strandat 176.805 kb on - strandat 176.814 kb on + strandat 176.814 kb on + strandat 176.814 kb on + strandat 176.816 kb on - strandat 176.824 kb on + strandat 176.830 kb on - strandat 176.832 kb on - strandat 176.832 kb on - strandat 176.840 kb on - strandat 176.902 kb on - strandat 176.923 kb on + strandat 177.010 kb on - strandat 177.123 kb on - strand, within CSW01_00940at 177.152 kb on - strand, within CSW01_00940at 177.265 kb on - strandat 177.274 kb on - strandat 177.490 kb on + strand, within CSW01_00945at 177.492 kb on + strand, within CSW01_00945at 177.492 kb on + strand, within CSW01_00945at 177.511 kb on + strand, within CSW01_00945at 177.528 kb on - strand, within CSW01_00945at 177.598 kb on + strand, within CSW01_00945at 177.601 kb on + strand, within CSW01_00945at 177.611 kb on + strand, within CSW01_00945at 177.614 kb on - strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.619 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.634 kb on - strand, within CSW01_00945at 177.669 kb on + strand, within CSW01_00945at 177.671 kb on + strand, within CSW01_00945at 177.671 kb on + strand, within CSW01_00945at 177.679 kb on - strand, within CSW01_00945at 177.690 kb on - strand, within CSW01_00945at 177.861 kb on + strandat 177.867 kb on - strandat 177.874 kb on + strandat 177.879 kb on + strandat 177.882 kb on - strandat 177.884 kb on + strandat 177.884 kb on + strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.894 kb on + strandat 177.961 kb on - strand, within CSW01_00950at 177.978 kb on + strand, within CSW01_00950at 177.996 kb on - strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.051 kb on + strand, within CSW01_00950at 178.052 kb on + strand, within CSW01_00950at 178.088 kb on - strand, within CSW01_00950at 178.155 kb on - strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.163 kb on + strand, within CSW01_00950at 178.166 kb on - strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.174 kb on + strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.199 kb on - strand, within CSW01_00950at 178.201 kb on + strand, within CSW01_00950at 178.209 kb on + strand, within CSW01_00950at 178.211 kb on - strand, within CSW01_00950at 178.303 kb on - strand, within CSW01_00950at 178.328 kb on + strand, within CSW01_00950at 178.329 kb on + strand, within CSW01_00950at 178.329 kb on + strand, within CSW01_00950at 178.330 kb on + strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.338 kb on - strand, within CSW01_00950at 178.356 kb on + strand, within CSW01_00950at 178.389 kb on + strandat 178.523 kb on + strandat 178.530 kb on + strandat 178.538 kb on + strandat 178.546 kb on - strandat 178.565 kb on + strandat 178.565 kb on + strandat 178.644 kb on - strandat 178.715 kb on + strandat 178.725 kb on + strandat 178.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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176,454 - CSW01_00935 0.69 -0.2
176,455 - CSW01_00935 0.69 +0.7
176,500 + CSW01_00935 0.72 +1.3
176,547 + CSW01_00935 0.75 -3.4
176,562 - CSW01_00935 0.76 +0.3
176,601 + CSW01_00935 0.79 +0.6
176,609 + CSW01_00935 0.79 +0.8
176,612 - CSW01_00935 0.79 -1.1
176,646 + CSW01_00935 0.81 -0.5
176,654 - CSW01_00935 0.82 -0.7
176,661 - CSW01_00935 0.82 -1.9
176,663 - CSW01_00935 0.82 -0.8
176,663 - CSW01_00935 0.82 +1.3
176,690 - CSW01_00935 0.84 -0.7
176,711 - CSW01_00935 0.85 -0.6
176,778 + CSW01_00935 0.90 -1.1
176,778 + CSW01_00935 0.90 -2.4
176,786 - -3.4
176,786 - -0.2
176,792 + +0.1
176,797 + -1.3
176,797 + -2.0
176,800 + -1.6
176,805 - +1.8
176,805 - +0.5
176,814 + +0.0
176,814 + +0.1
176,814 + +1.4
176,816 - -0.2
176,824 + -2.4
176,830 - -2.0
176,832 - +1.1
176,832 - +0.9
176,840 - -2.2
176,902 - +2.4
176,923 + -0.2
177,010 - -0.6
177,123 - CSW01_00940 0.49 +0.0
177,152 - CSW01_00940 0.61 -2.1
177,265 - -2.9
177,274 - +0.1
177,490 + CSW01_00945 0.13 -0.8
177,492 + CSW01_00945 0.13 +1.1
177,492 + CSW01_00945 0.13 -0.5
177,511 + CSW01_00945 0.19 -1.1
177,528 - CSW01_00945 0.25 +0.9
177,598 + CSW01_00945 0.48 -2.8
177,601 + CSW01_00945 0.49 +1.5
177,611 + CSW01_00945 0.52 +1.7
177,614 - CSW01_00945 0.53 +1.0
177,616 + CSW01_00945 0.53 -3.8
177,616 + CSW01_00945 0.53 -3.1
177,616 + CSW01_00945 0.53 -3.7
177,616 + CSW01_00945 0.53 +1.4
177,619 - CSW01_00945 0.54 -0.3
177,624 - CSW01_00945 0.56 +1.7
177,624 - CSW01_00945 0.56 +1.8
177,624 - CSW01_00945 0.56 +0.9
177,624 - CSW01_00945 0.56 +0.6
177,624 - CSW01_00945 0.56 +1.1
177,624 - CSW01_00945 0.56 -2.4
177,624 - CSW01_00945 0.56 +1.8
177,634 - CSW01_00945 0.59 +1.1
177,669 + CSW01_00945 0.71 -0.0
177,671 + CSW01_00945 0.71 +0.2
177,671 + CSW01_00945 0.71 -2.3
177,679 - CSW01_00945 0.74 -1.1
177,690 - CSW01_00945 0.77 +0.6
177,861 + -2.7
177,867 - -0.6
177,874 + +0.7
177,879 + +1.6
177,882 - -4.6
177,884 + -0.4
177,884 + +1.6
177,892 - -0.8
177,892 - -1.3
177,892 - -0.2
177,892 - +1.1
177,894 + +0.8
177,961 - CSW01_00950 0.18 -1.2
177,978 + CSW01_00950 0.21 +1.1
177,996 - CSW01_00950 0.24 -0.2
178,044 + CSW01_00950 0.32 -0.4
178,044 + CSW01_00950 0.32 +1.0
178,051 + CSW01_00950 0.34 -0.2
178,052 + CSW01_00950 0.34 -2.8
178,088 - CSW01_00950 0.40 +0.2
178,155 - CSW01_00950 0.52 +1.8
178,158 + CSW01_00950 0.52 -0.5
178,158 + CSW01_00950 0.52 +1.4
178,158 + CSW01_00950 0.52 +0.1
178,163 + CSW01_00950 0.53 -0.7
178,166 - CSW01_00950 0.54 -1.0
178,168 + CSW01_00950 0.54 -2.0
178,168 + CSW01_00950 0.54 -2.8
178,168 + CSW01_00950 0.54 -0.1
178,168 + CSW01_00950 0.54 -0.8
178,168 + CSW01_00950 0.54 +2.2
178,168 + CSW01_00950 0.54 -2.0
178,168 + CSW01_00950 0.54 -0.4
178,174 + CSW01_00950 0.55 -1.9
178,176 - CSW01_00950 0.56 +1.9
178,176 - CSW01_00950 0.56 -1.8
178,176 - CSW01_00950 0.56 -2.9
178,176 - CSW01_00950 0.56 -3.2
178,176 - CSW01_00950 0.56 -1.1
178,199 - CSW01_00950 0.60 +2.2
178,201 + CSW01_00950 0.60 -4.3
178,209 + CSW01_00950 0.62 +0.4
178,211 - CSW01_00950 0.62 -1.0
178,303 - CSW01_00950 0.78 -0.3
178,328 + CSW01_00950 0.83 +1.2
178,329 + CSW01_00950 0.83 -0.6
178,329 + CSW01_00950 0.83 -0.4
178,330 + CSW01_00950 0.83 +0.5
178,338 - CSW01_00950 0.84 +0.4
178,338 - CSW01_00950 0.84 +0.3
178,338 - CSW01_00950 0.84 -0.9
178,356 + CSW01_00950 0.88 -0.1
178,389 + -0.3
178,523 + +0.7
178,530 + -2.2
178,538 + +0.2
178,546 - -0.4
178,565 + +1.3
178,565 + +1.2
178,644 - -1.5
178,715 + -3.5
178,725 + +0.1
178,745 + +0.4

Or see this region's nucleotide sequence