Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00850

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00840 and CSW01_00845 are separated by 126 nucleotidesCSW01_00845 and CSW01_00850 are separated by 115 nucleotidesCSW01_00850 and CSW01_00855 are separated by 11 nucleotides CSW01_00840: CSW01_00840 - ketol-acid reductoisomerase, at 157,442 to 158,926 _00840 CSW01_00845: CSW01_00845 - cytoplasmic protein, at 159,053 to 159,304 _00845 CSW01_00850: CSW01_00850 - multidrug resistance protein, at 159,420 to 162,530 _00850 CSW01_00855: CSW01_00855 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 162,542 to 163,648 _00855 Position (kb) 159 160 161 162 163Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 158.587 kb on - strand, within CSW01_00840at 158.693 kb on + strand, within CSW01_00840at 158.729 kb on + strand, within CSW01_00840at 158.745 kb on + strand, within CSW01_00840at 158.791 kb on - strandat 158.871 kb on + strandat 158.871 kb on + strandat 158.899 kb on + strandat 158.913 kb on - strandat 158.954 kb on + strandat 158.954 kb on + strandat 158.954 kb on + strandat 158.983 kb on + strandat 158.985 kb on - strandat 159.025 kb on - strandat 159.025 kb on - strandat 159.054 kb on + strandat 159.057 kb on - strandat 159.417 kb on + strandat 159.439 kb on + strandat 159.446 kb on - strandat 159.475 kb on + strandat 159.606 kb on + strandat 159.619 kb on - strandat 159.639 kb on - strandat 159.648 kb on - strandat 159.675 kb on + strandat 159.675 kb on + strandat 159.698 kb on + strandat 159.698 kb on + strandat 159.706 kb on - strandat 159.718 kb on + strandat 159.732 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.887 kb on + strand, within CSW01_00850at 160.024 kb on + strand, within CSW01_00850at 160.046 kb on - strand, within CSW01_00850at 160.046 kb on - strand, within CSW01_00850at 160.053 kb on - strand, within CSW01_00850at 160.095 kb on + strand, within CSW01_00850at 160.095 kb on + strand, within CSW01_00850at 160.095 kb on + strand, within CSW01_00850at 160.097 kb on + strand, within CSW01_00850at 160.103 kb on - strand, within CSW01_00850at 160.103 kb on - strand, within CSW01_00850at 160.103 kb on - strand, within CSW01_00850at 160.146 kb on - strand, within CSW01_00850at 160.146 kb on - strand, within CSW01_00850at 160.156 kb on - strand, within CSW01_00850at 160.161 kb on - strand, within CSW01_00850at 160.216 kb on + strand, within CSW01_00850at 160.298 kb on + strand, within CSW01_00850at 160.333 kb on + strand, within CSW01_00850at 160.333 kb on + strand, within CSW01_00850at 160.396 kb on + strand, within CSW01_00850at 160.401 kb on + strand, within CSW01_00850at 160.402 kb on + strand, within CSW01_00850at 160.402 kb on + strand, within CSW01_00850at 160.507 kb on - strand, within CSW01_00850at 160.569 kb on + strand, within CSW01_00850at 160.571 kb on - strand, within CSW01_00850at 160.577 kb on - strand, within CSW01_00850at 160.601 kb on + strand, within CSW01_00850at 160.665 kb on + strand, within CSW01_00850at 160.754 kb on - strand, within CSW01_00850at 160.754 kb on - strand, within CSW01_00850at 160.833 kb on + strand, within CSW01_00850at 160.838 kb on + strand, within CSW01_00850at 160.838 kb on + strand, within CSW01_00850at 160.838 kb on + strand, within CSW01_00850at 160.838 kb on + strand, within CSW01_00850at 160.838 kb on + strand, within CSW01_00850at 160.838 kb on + strand, within CSW01_00850at 160.838 kb on + strand, within CSW01_00850at 160.838 kb on + strand, within CSW01_00850at 160.838 kb on + strand, within CSW01_00850at 160.840 kb on + strand, within CSW01_00850at 160.841 kb on - strand, within CSW01_00850at 160.846 kb on - strand, within CSW01_00850at 160.846 kb on - strand, within CSW01_00850at 160.851 kb on - strand, within CSW01_00850at 160.952 kb on + strand, within CSW01_00850at 160.952 kb on - strand, within CSW01_00850at 161.022 kb on - strand, within CSW01_00850at 161.059 kb on + strand, within CSW01_00850at 161.069 kb on + strand, within CSW01_00850at 161.069 kb on + strand, within CSW01_00850at 161.077 kb on - strand, within CSW01_00850at 161.077 kb on - strand, within CSW01_00850at 161.077 kb on - strand, within CSW01_00850at 161.125 kb on + strand, within CSW01_00850at 161.186 kb on - strand, within CSW01_00850at 161.275 kb on + strand, within CSW01_00850at 161.283 kb on - strand, within CSW01_00850at 161.318 kb on - strand, within CSW01_00850at 161.336 kb on + strand, within CSW01_00850at 161.336 kb on + strand, within CSW01_00850at 161.336 kb on + strand, within CSW01_00850at 161.344 kb on - strand, within CSW01_00850at 161.344 kb on - strand, within CSW01_00850at 161.344 kb on - strand, within CSW01_00850at 161.344 kb on - strand, within CSW01_00850at 161.344 kb on - strand, within CSW01_00850at 161.344 kb on - strand, within CSW01_00850at 161.464 kb on - strand, within CSW01_00850at 161.464 kb on - strand, within CSW01_00850at 161.473 kb on + strand, within CSW01_00850at 161.478 kb on + strand, within CSW01_00850at 161.481 kb on - strand, within CSW01_00850at 161.481 kb on - strand, within CSW01_00850at 161.481 kb on - strand, within CSW01_00850at 161.481 kb on - strand, within CSW01_00850at 161.481 kb on - strand, within CSW01_00850at 161.483 kb on - strand, within CSW01_00850at 161.524 kb on + strand, within CSW01_00850at 161.531 kb on - strand, within CSW01_00850at 161.561 kb on + strand, within CSW01_00850at 161.604 kb on + strand, within CSW01_00850at 161.657 kb on + strand, within CSW01_00850at 161.713 kb on - strand, within CSW01_00850at 161.732 kb on - strand, within CSW01_00850at 161.772 kb on + strand, within CSW01_00850at 161.799 kb on - strand, within CSW01_00850at 161.806 kb on - strand, within CSW01_00850at 161.824 kb on + strand, within CSW01_00850at 161.824 kb on + strand, within CSW01_00850at 161.832 kb on - strand, within CSW01_00850at 161.884 kb on + strand, within CSW01_00850at 161.939 kb on + strand, within CSW01_00850at 161.939 kb on + strand, within CSW01_00850at 161.963 kb on + strand, within CSW01_00850at 162.003 kb on - strand, within CSW01_00850at 162.029 kb on - strand, within CSW01_00850at 162.029 kb on - strand, within CSW01_00850at 162.038 kb on + strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.039 kb on - strand, within CSW01_00850at 162.055 kb on + strand, within CSW01_00850at 162.094 kb on + strand, within CSW01_00850at 162.106 kb on + strand, within CSW01_00850at 162.134 kb on - strand, within CSW01_00850at 162.158 kb on - strand, within CSW01_00850at 162.166 kb on + strand, within CSW01_00850at 162.190 kb on + strand, within CSW01_00850at 162.190 kb on + strand, within CSW01_00850at 162.190 kb on + strand, within CSW01_00850at 162.196 kb on + strand, within CSW01_00850at 162.204 kb on - strand, within CSW01_00850at 162.231 kb on - strandat 162.231 kb on - strandat 162.231 kb on - strandat 162.233 kb on - strandat 162.262 kb on - strandat 162.278 kb on - strandat 162.278 kb on - strandat 162.290 kb on - strandat 162.359 kb on + strandat 162.398 kb on + strandat 162.515 kb on + strandat 162.555 kb on - strandat 162.555 kb on - strandat 162.555 kb on - strandat 162.555 kb on - strandat 162.598 kb on + strandat 162.598 kb on + strandat 162.606 kb on + strandat 162.606 kb on + strandat 162.606 kb on - strandat 162.606 kb on - strandat 162.606 kb on - strandat 162.606 kb on - strandat 162.611 kb on + strandat 162.637 kb on + strandat 162.652 kb on + strandat 162.652 kb on + strandat 162.652 kb on + strandat 162.660 kb on - strand, within CSW01_00855at 162.725 kb on + strand, within CSW01_00855at 162.733 kb on - strand, within CSW01_00855at 162.748 kb on + strand, within CSW01_00855at 162.757 kb on + strand, within CSW01_00855at 162.765 kb on - strand, within CSW01_00855at 162.772 kb on + strand, within CSW01_00855at 162.772 kb on + strand, within CSW01_00855at 162.773 kb on + strand, within CSW01_00855at 162.773 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.789 kb on + strand, within CSW01_00855at 162.797 kb on - strand, within CSW01_00855at 162.902 kb on - strand, within CSW01_00855at 162.941 kb on + strand, within CSW01_00855at 162.949 kb on - strand, within CSW01_00855at 163.035 kb on + strand, within CSW01_00855at 163.043 kb on - strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.066 kb on - strand, within CSW01_00855at 163.079 kb on + strand, within CSW01_00855at 163.162 kb on + strand, within CSW01_00855at 163.201 kb on + strand, within CSW01_00855at 163.206 kb on + strand, within CSW01_00855at 163.232 kb on + strand, within CSW01_00855at 163.259 kb on + strand, within CSW01_00855at 163.267 kb on - strand, within CSW01_00855at 163.267 kb on - strand, within CSW01_00855at 163.274 kb on - strand, within CSW01_00855at 163.274 kb on - strand, within CSW01_00855at 163.317 kb on - strand, within CSW01_00855at 163.349 kb on - strand, within CSW01_00855at 163.355 kb on + strand, within CSW01_00855at 163.361 kb on + strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.422 kb on - strand, within CSW01_00855at 163.443 kb on + strand, within CSW01_00855at 163.443 kb on - strand, within CSW01_00855at 163.456 kb on + strand, within CSW01_00855at 163.464 kb on - strand, within CSW01_00855at 163.506 kb on - strand, within CSW01_00855

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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158,587 - CSW01_00840 0.77 -2.2
158,693 + CSW01_00840 0.84 -1.6
158,729 + CSW01_00840 0.87 -3.2
158,745 + CSW01_00840 0.88 -0.8
158,791 - -2.2
158,871 + +1.6
158,871 + -0.2
158,899 + -0.3
158,913 - -0.0
158,954 + -3.3
158,954 + -0.5
158,954 + -2.8
158,983 + +0.7
158,985 - -2.6
159,025 - +0.3
159,025 - +0.0
159,054 + -1.0
159,057 - +1.7
159,417 + +0.3
159,439 + +0.8
159,446 - -2.7
159,475 + +0.8
159,606 + -1.2
159,619 - -1.8
159,639 - -1.0
159,648 - -4.4
159,675 + +0.3
159,675 + -3.4
159,698 + +1.0
159,698 + +0.1
159,706 - +1.4
159,718 + -3.9
159,732 + CSW01_00850 0.10 -3.4
159,850 + CSW01_00850 0.14 +1.3
159,850 + CSW01_00850 0.14 -1.0
159,850 + CSW01_00850 0.14 -0.7
159,850 + CSW01_00850 0.14 -3.1
159,850 + CSW01_00850 0.14 +0.8
159,850 + CSW01_00850 0.14 -1.1
159,858 - CSW01_00850 0.14 +1.0
159,858 - CSW01_00850 0.14 -0.2
159,858 - CSW01_00850 0.14 +1.1
159,858 - CSW01_00850 0.14 -2.1
159,858 - CSW01_00850 0.14 -0.2
159,887 + CSW01_00850 0.15 +2.4
160,024 + CSW01_00850 0.19 +0.2
160,046 - CSW01_00850 0.20 -1.0
160,046 - CSW01_00850 0.20 -3.9
160,053 - CSW01_00850 0.20 +0.3
160,095 + CSW01_00850 0.22 -2.1
160,095 + CSW01_00850 0.22 +0.3
160,095 + CSW01_00850 0.22 -0.4
160,097 + CSW01_00850 0.22 -0.2
160,103 - CSW01_00850 0.22 +1.0
160,103 - CSW01_00850 0.22 +0.7
160,103 - CSW01_00850 0.22 +1.3
160,146 - CSW01_00850 0.23 -0.7
160,146 - CSW01_00850 0.23 +0.7
160,156 - CSW01_00850 0.24 +0.3
160,161 - CSW01_00850 0.24 -0.0
160,216 + CSW01_00850 0.26 +2.9
160,298 + CSW01_00850 0.28 +0.4
160,333 + CSW01_00850 0.29 +0.5
160,333 + CSW01_00850 0.29 +0.0
160,396 + CSW01_00850 0.31 -1.3
160,401 + CSW01_00850 0.32 +1.1
160,402 + CSW01_00850 0.32 -3.4
160,402 + CSW01_00850 0.32 +0.0
160,507 - CSW01_00850 0.35 +0.5
160,569 + CSW01_00850 0.37 -2.5
160,571 - CSW01_00850 0.37 -1.4
160,577 - CSW01_00850 0.37 -2.0
160,601 + CSW01_00850 0.38 -2.6
160,665 + CSW01_00850 0.40 +0.0
160,754 - CSW01_00850 0.43 +0.8
160,754 - CSW01_00850 0.43 -4.4
160,833 + CSW01_00850 0.45 -1.4
160,838 + CSW01_00850 0.46 -0.4
160,838 + CSW01_00850 0.46 -2.8
160,838 + CSW01_00850 0.46 +1.0
160,838 + CSW01_00850 0.46 -5.2
160,838 + CSW01_00850 0.46 -2.4
160,838 + CSW01_00850 0.46 -0.8
160,838 + CSW01_00850 0.46 -0.7
160,838 + CSW01_00850 0.46 +0.1
160,838 + CSW01_00850 0.46 +0.7
160,840 + CSW01_00850 0.46 -0.8
160,841 - CSW01_00850 0.46 +1.9
160,846 - CSW01_00850 0.46 -0.1
160,846 - CSW01_00850 0.46 +2.5
160,851 - CSW01_00850 0.46 +0.1
160,952 + CSW01_00850 0.49 +0.2
160,952 - CSW01_00850 0.49 -1.3
161,022 - CSW01_00850 0.51 -2.5
161,059 + CSW01_00850 0.53 +0.0
161,069 + CSW01_00850 0.53 +1.3
161,069 + CSW01_00850 0.53 -0.4
161,077 - CSW01_00850 0.53 +0.3
161,077 - CSW01_00850 0.53 -0.2
161,077 - CSW01_00850 0.53 -0.2
161,125 + CSW01_00850 0.55 -1.4
161,186 - CSW01_00850 0.57 +1.7
161,275 + CSW01_00850 0.60 +0.0
161,283 - CSW01_00850 0.60 +1.0
161,318 - CSW01_00850 0.61 -1.5
161,336 + CSW01_00850 0.62 -1.3
161,336 + CSW01_00850 0.62 +0.4
161,336 + CSW01_00850 0.62 -0.1
161,344 - CSW01_00850 0.62 +0.3
161,344 - CSW01_00850 0.62 +0.2
161,344 - CSW01_00850 0.62 -0.5
161,344 - CSW01_00850 0.62 -1.1
161,344 - CSW01_00850 0.62 +0.8
161,344 - CSW01_00850 0.62 +0.8
161,464 - CSW01_00850 0.66 -1.7
161,464 - CSW01_00850 0.66 -0.2
161,473 + CSW01_00850 0.66 -2.8
161,478 + CSW01_00850 0.66 +0.3
161,481 - CSW01_00850 0.66 -0.4
161,481 - CSW01_00850 0.66 +0.3
161,481 - CSW01_00850 0.66 +0.7
161,481 - CSW01_00850 0.66 -0.6
161,481 - CSW01_00850 0.66 -3.8
161,483 - CSW01_00850 0.66 +1.2
161,524 + CSW01_00850 0.68 +0.8
161,531 - CSW01_00850 0.68 -2.6
161,561 + CSW01_00850 0.69 -1.0
161,604 + CSW01_00850 0.70 +0.1
161,657 + CSW01_00850 0.72 +0.0
161,713 - CSW01_00850 0.74 -0.8
161,732 - CSW01_00850 0.74 -2.6
161,772 + CSW01_00850 0.76 -2.9
161,799 - CSW01_00850 0.76 +1.7
161,806 - CSW01_00850 0.77 -2.8
161,824 + CSW01_00850 0.77 +0.2
161,824 + CSW01_00850 0.77 +0.0
161,832 - CSW01_00850 0.78 -2.7
161,884 + CSW01_00850 0.79 -2.4
161,939 + CSW01_00850 0.81 -0.2
161,939 + CSW01_00850 0.81 +0.3
161,963 + CSW01_00850 0.82 -3.3
162,003 - CSW01_00850 0.83 +0.7
162,029 - CSW01_00850 0.84 -3.0
162,029 - CSW01_00850 0.84 +2.9
162,038 + CSW01_00850 0.84 +1.1
162,039 - CSW01_00850 0.84 -2.8
162,039 - CSW01_00850 0.84 -1.8
162,039 - CSW01_00850 0.84 -1.5
162,039 - CSW01_00850 0.84 +0.2
162,039 - CSW01_00850 0.84 +0.8
162,039 - CSW01_00850 0.84 -2.0
162,055 + CSW01_00850 0.85 +0.5
162,094 + CSW01_00850 0.86 +0.4
162,106 + CSW01_00850 0.86 +1.1
162,134 - CSW01_00850 0.87 -1.4
162,158 - CSW01_00850 0.88 -2.2
162,166 + CSW01_00850 0.88 +1.5
162,190 + CSW01_00850 0.89 -2.4
162,190 + CSW01_00850 0.89 +1.1
162,190 + CSW01_00850 0.89 -0.3
162,196 + CSW01_00850 0.89 -3.3
162,204 - CSW01_00850 0.89 +0.2
162,231 - +0.1
162,231 - +1.3
162,231 - +0.3
162,233 - +0.1
162,262 - +0.8
162,278 - +0.6
162,278 - +1.3
162,290 - +0.6
162,359 + -0.9
162,398 + -0.2
162,515 + +0.6
162,555 - -1.1
162,555 - -2.6
162,555 - -4.6
162,555 - +1.8
162,598 + -0.3
162,598 + -0.7
162,606 + +0.3
162,606 + +1.5
162,606 - +0.5
162,606 - -0.7
162,606 - +0.9
162,606 - -0.6
162,611 + -3.5
162,637 + -2.4
162,652 + -0.8
162,652 + +1.0
162,652 + +2.1
162,660 - CSW01_00855 0.11 +0.7
162,725 + CSW01_00855 0.17 -0.1
162,733 - CSW01_00855 0.17 +1.5
162,748 + CSW01_00855 0.19 +1.0
162,757 + CSW01_00855 0.19 +0.8
162,765 - CSW01_00855 0.20 -2.8
162,772 + CSW01_00855 0.21 +0.7
162,772 + CSW01_00855 0.21 +0.9
162,773 + CSW01_00855 0.21 +0.5
162,773 - CSW01_00855 0.21 -2.6
162,780 - CSW01_00855 0.21 -2.8
162,780 - CSW01_00855 0.21 +1.4
162,780 - CSW01_00855 0.21 +0.8
162,780 - CSW01_00855 0.21 -1.2
162,780 - CSW01_00855 0.21 -3.1
162,780 - CSW01_00855 0.21 -3.5
162,780 - CSW01_00855 0.21 -1.6
162,780 - CSW01_00855 0.21 +1.2
162,780 - CSW01_00855 0.21 +1.0
162,789 + CSW01_00855 0.22 -0.1
162,797 - CSW01_00855 0.23 +0.7
162,902 - CSW01_00855 0.33 -0.5
162,941 + CSW01_00855 0.36 +0.4
162,949 - CSW01_00855 0.37 -0.3
163,035 + CSW01_00855 0.45 -1.8
163,043 - CSW01_00855 0.45 -0.9
163,058 + CSW01_00855 0.47 +0.5
163,058 + CSW01_00855 0.47 +0.0
163,058 + CSW01_00855 0.47 -0.2
163,058 + CSW01_00855 0.47 -2.6
163,058 + CSW01_00855 0.47 -2.6
163,066 - CSW01_00855 0.47 -1.5
163,079 + CSW01_00855 0.49 -2.9
163,162 + CSW01_00855 0.56 -2.1
163,201 + CSW01_00855 0.60 +0.6
163,206 + CSW01_00855 0.60 -2.4
163,232 + CSW01_00855 0.62 +1.8
163,259 + CSW01_00855 0.65 -0.4
163,267 - CSW01_00855 0.65 +0.2
163,267 - CSW01_00855 0.65 -1.4
163,274 - CSW01_00855 0.66 +0.9
163,274 - CSW01_00855 0.66 -0.6
163,317 - CSW01_00855 0.70 +2.0
163,349 - CSW01_00855 0.73 -0.3
163,355 + CSW01_00855 0.73 -2.2
163,361 + CSW01_00855 0.74 -0.7
163,363 - CSW01_00855 0.74 -2.8
163,363 - CSW01_00855 0.74 -2.6
163,363 - CSW01_00855 0.74 -0.4
163,363 - CSW01_00855 0.74 +1.4
163,422 - CSW01_00855 0.79 -3.1
163,443 + CSW01_00855 0.81 +0.5
163,443 - CSW01_00855 0.81 -0.2
163,456 + CSW01_00855 0.83 +0.5
163,464 - CSW01_00855 0.83 -2.8
163,506 - CSW01_00855 0.87 +0.9

Or see this region's nucleotide sequence