Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00670 and CSW01_00675 are separated by 12 nucleotides CSW01_00675 and CSW01_00680 are separated by 82 nucleotides CSW01_00680 and CSW01_00685 are separated by 114 nucleotides
CSW01_00670: CSW01_00670 - hypothetical protein, at 126,888 to 128,432
_00670
CSW01_00675: CSW01_00675 - hypothetical protein, at 128,445 to 128,633
_00675
CSW01_00680: CSW01_00680 - Cof-type HAD-IIB family hydrolase, at 128,716 to 129,543
_00680
CSW01_00685: CSW01_00685 - lysophospholipase, at 129,658 to 130,674
_00685
Position (kb) 128
129
130 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 127.722 kb on + strand, within CSW01_00670 at 127.761 kb on + strand, within CSW01_00670 at 127.769 kb on - strand, within CSW01_00670 at 127.786 kb on - strand, within CSW01_00670 at 127.790 kb on + strand, within CSW01_00670 at 127.798 kb on - strand, within CSW01_00670 at 127.811 kb on + strand, within CSW01_00670 at 127.811 kb on + strand, within CSW01_00670 at 127.811 kb on + strand, within CSW01_00670 at 127.818 kb on + strand, within CSW01_00670 at 127.819 kb on - strand, within CSW01_00670 at 127.833 kb on + strand, within CSW01_00670 at 127.833 kb on + strand, within CSW01_00670 at 127.841 kb on - strand, within CSW01_00670 at 127.841 kb on - strand, within CSW01_00670 at 127.841 kb on - strand, within CSW01_00670 at 127.841 kb on - strand, within CSW01_00670 at 127.933 kb on - strand, within CSW01_00670 at 127.936 kb on + strand, within CSW01_00670 at 127.947 kb on + strand, within CSW01_00670 at 128.012 kb on + strand, within CSW01_00670 at 128.024 kb on + strand, within CSW01_00670 at 128.024 kb on + strand, within CSW01_00670 at 128.032 kb on - strand, within CSW01_00670 at 128.032 kb on - strand, within CSW01_00670 at 128.032 kb on - strand, within CSW01_00670 at 128.032 kb on - strand, within CSW01_00670 at 128.054 kb on + strand, within CSW01_00670 at 128.062 kb on - strand, within CSW01_00670 at 128.094 kb on + strand, within CSW01_00670 at 128.094 kb on + strand, within CSW01_00670 at 128.102 kb on - strand, within CSW01_00670 at 128.125 kb on - strand, within CSW01_00670 at 128.142 kb on + strand, within CSW01_00670 at 128.161 kb on + strand, within CSW01_00670 at 128.166 kb on - strand, within CSW01_00670 at 128.204 kb on + strand, within CSW01_00670 at 128.214 kb on + strand, within CSW01_00670 at 128.237 kb on + strand, within CSW01_00670 at 128.237 kb on + strand, within CSW01_00670 at 128.244 kb on + strand, within CSW01_00670 at 128.245 kb on - strand, within CSW01_00670 at 128.245 kb on - strand, within CSW01_00670 at 128.252 kb on + strand, within CSW01_00670 at 128.260 kb on - strand, within CSW01_00670 at 128.260 kb on - strand, within CSW01_00670 at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.282 kb on + strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.290 kb on - strand at 128.305 kb on - strand at 128.331 kb on + strand at 128.358 kb on - strand at 128.373 kb on - strand at 128.383 kb on + strand at 128.396 kb on - strand at 128.418 kb on - strand at 128.425 kb on + strand at 128.426 kb on - strand at 128.426 kb on - strand at 128.426 kb on - strand at 128.453 kb on + strand at 128.453 kb on + strand at 128.466 kb on - strand, within CSW01_00675 at 128.523 kb on + strand, within CSW01_00675 at 128.556 kb on - strand, within CSW01_00675 at 128.627 kb on + strand at 128.635 kb on - strand at 128.635 kb on - strand at 128.671 kb on + strand at 128.692 kb on + strand at 128.714 kb on + strand at 128.722 kb on - strand at 128.767 kb on + strand at 128.826 kb on - strand, within CSW01_00680 at 128.903 kb on + strand, within CSW01_00680 at 128.904 kb on + strand, within CSW01_00680 at 128.905 kb on + strand, within CSW01_00680 at 128.912 kb on - strand, within CSW01_00680 at 128.920 kb on - strand, within CSW01_00680 at 128.932 kb on - strand, within CSW01_00680 at 128.932 kb on - strand, within CSW01_00680 at 128.959 kb on + strand, within CSW01_00680 at 128.964 kb on + strand, within CSW01_00680 at 128.964 kb on + strand, within CSW01_00680 at 128.965 kb on - strand, within CSW01_00680 at 128.972 kb on - strand, within CSW01_00680 at 128.979 kb on - strand, within CSW01_00680 at 128.979 kb on - strand, within CSW01_00680 at 129.029 kb on + strand, within CSW01_00680 at 129.029 kb on + strand, within CSW01_00680 at 129.029 kb on + strand, within CSW01_00680 at 129.029 kb on + strand, within CSW01_00680 at 129.037 kb on - strand, within CSW01_00680 at 129.037 kb on - strand, within CSW01_00680 at 129.039 kb on + strand, within CSW01_00680 at 129.124 kb on - strand, within CSW01_00680 at 129.202 kb on + strand, within CSW01_00680 at 129.210 kb on - strand, within CSW01_00680 at 129.301 kb on - strand, within CSW01_00680 at 129.320 kb on - strand, within CSW01_00680 at 129.382 kb on - strand, within CSW01_00680 at 129.417 kb on - strand, within CSW01_00680 at 129.582 kb on + strand at 129.582 kb on + strand at 129.582 kb on + strand at 129.582 kb on + strand at 129.582 kb on + strand at 129.582 kb on + strand at 129.589 kb on - strand at 129.590 kb on - strand at 129.590 kb on - strand at 129.590 kb on - strand at 129.590 kb on - strand at 129.590 kb on - strand at 129.597 kb on - strand at 129.600 kb on - strand at 129.605 kb on - strand at 129.605 kb on - strand at 129.605 kb on - strand at 129.685 kb on - strand at 129.687 kb on + strand at 129.695 kb on - strand at 129.695 kb on - strand at 129.787 kb on + strand, within CSW01_00685 at 129.787 kb on + strand, within CSW01_00685 at 129.787 kb on + strand, within CSW01_00685 at 129.845 kb on + strand, within CSW01_00685 at 129.845 kb on + strand, within CSW01_00685 at 129.922 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.933 kb on + strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.941 kb on - strand, within CSW01_00685 at 129.945 kb on + strand, within CSW01_00685 at 129.980 kb on + strand, within CSW01_00685 at 129.992 kb on + strand, within CSW01_00685 at 129.992 kb on + strand, within CSW01_00685 at 129.992 kb on + strand, within CSW01_00685 at 130.000 kb on - strand, within CSW01_00685 at 130.058 kb on + strand, within CSW01_00685 at 130.066 kb on - strand, within CSW01_00685 at 130.066 kb on - strand, within CSW01_00685 at 130.066 kb on - strand, within CSW01_00685 at 130.139 kb on + strand, within CSW01_00685 at 130.139 kb on + strand, within CSW01_00685 at 130.147 kb on - strand, within CSW01_00685 at 130.154 kb on - strand, within CSW01_00685 at 130.177 kb on + strand, within CSW01_00685 at 130.177 kb on + strand, within CSW01_00685 at 130.186 kb on + strand, within CSW01_00685 at 130.187 kb on + strand, within CSW01_00685 at 130.187 kb on + strand, within CSW01_00685 at 130.187 kb on + strand, within CSW01_00685 at 130.187 kb on + strand, within CSW01_00685 at 130.194 kb on - strand, within CSW01_00685 at 130.195 kb on - strand, within CSW01_00685 at 130.195 kb on - strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.222 kb on + strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.230 kb on - strand, within CSW01_00685 at 130.328 kb on + strand, within CSW01_00685 at 130.347 kb on + strand, within CSW01_00685 at 130.383 kb on - strand, within CSW01_00685 at 130.401 kb on - strand, within CSW01_00685 at 130.475 kb on + strand, within CSW01_00685 at 130.483 kb on - strand, within CSW01_00685 at 130.520 kb on + strand, within CSW01_00685
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 127,722 + CSW01_00670 0.54 -2.9 127,761 + CSW01_00670 0.57 -1.0 127,769 - CSW01_00670 0.57 -1.8 127,786 - CSW01_00670 0.58 -1.4 127,790 + CSW01_00670 0.58 +0.2 127,798 - CSW01_00670 0.59 +1.0 127,811 + CSW01_00670 0.60 -2.3 127,811 + CSW01_00670 0.60 -1.5 127,811 + CSW01_00670 0.60 +0.7 127,818 + CSW01_00670 0.60 +1.9 127,819 - CSW01_00670 0.60 -0.4 127,833 + CSW01_00670 0.61 +0.7 127,833 + CSW01_00670 0.61 +0.1 127,841 - CSW01_00670 0.62 +0.3 127,841 - CSW01_00670 0.62 -1.0 127,841 - CSW01_00670 0.62 +0.3 127,841 - CSW01_00670 0.62 -3.5 127,933 - CSW01_00670 0.68 -1.9 127,936 + CSW01_00670 0.68 -1.2 127,947 + CSW01_00670 0.69 +0.6 128,012 + CSW01_00670 0.73 -0.8 128,024 + CSW01_00670 0.74 -0.2 128,024 + CSW01_00670 0.74 +1.7 128,032 - CSW01_00670 0.74 -1.0 128,032 - CSW01_00670 0.74 -1.9 128,032 - CSW01_00670 0.74 -0.5 128,032 - CSW01_00670 0.74 -0.4 128,054 + CSW01_00670 0.75 +2.4 128,062 - CSW01_00670 0.76 -3.6 128,094 + CSW01_00670 0.78 +0.9 128,094 + CSW01_00670 0.78 +0.7 128,102 - CSW01_00670 0.79 -0.2 128,125 - CSW01_00670 0.80 -0.2 128,142 + CSW01_00670 0.81 +1.3 128,161 + CSW01_00670 0.82 -1.7 128,166 - CSW01_00670 0.83 -2.0 128,204 + CSW01_00670 0.85 +2.8 128,214 + CSW01_00670 0.86 +0.3 128,237 + CSW01_00670 0.87 -2.2 128,237 + CSW01_00670 0.87 +0.7 128,244 + CSW01_00670 0.88 +0.1 128,245 - CSW01_00670 0.88 +0.1 128,245 - CSW01_00670 0.88 -1.4 128,252 + CSW01_00670 0.88 -1.5 128,260 - CSW01_00670 0.89 -0.8 128,260 - CSW01_00670 0.89 -0.1 128,282 + -0.9 128,282 + -2.4 128,282 + +0.5 128,282 + +0.3 128,282 + -1.3 128,282 + -0.9 128,282 + +0.2 128,282 + -0.4 128,282 + +0.6 128,282 + +1.4 128,282 + +1.8 128,282 + -1.9 128,282 + +1.8 128,282 + -0.8 128,282 + -3.6 128,282 + -0.7 128,282 + +1.2 128,282 + +0.1 128,282 + +1.9 128,282 + -0.2 128,282 + -0.9 128,282 + +0.5 128,282 + +0.8 128,290 - -1.6 128,290 - -0.2 128,290 - -0.0 128,290 - -1.0 128,290 - +1.6 128,290 - -0.9 128,290 - -3.8 128,290 - +0.4 128,290 - -0.4 128,290 - +0.6 128,290 - -2.1 128,290 - -1.0 128,290 - -0.5 128,290 - +0.8 128,290 - -0.3 128,290 - +0.1 128,290 - -0.3 128,290 - -1.9 128,290 - -3.0 128,290 - +1.4 128,290 - +0.6 128,290 - -1.0 128,290 - -0.1 128,290 - -1.8 128,290 - -2.3 128,290 - +1.5 128,290 - -3.5 128,290 - -3.1 128,290 - +0.1 128,290 - -1.1 128,290 - -4.2 128,290 - +1.1 128,290 - -0.6 128,290 - -0.1 128,290 - +1.0 128,290 - -2.4 128,305 - -1.0 128,331 + +0.2 128,358 - -3.3 128,373 - +1.4 128,383 + +1.3 128,396 - +2.6 128,418 - +1.3 128,425 + +1.7 128,426 - +0.2 128,426 - -0.2 128,426 - +0.0 128,453 + +0.2 128,453 + +0.5 128,466 - CSW01_00675 0.11 -0.4 128,523 + CSW01_00675 0.41 -3.4 128,556 - CSW01_00675 0.59 +0.4 128,627 + -2.3 128,635 - +0.7 128,635 - +1.0 128,671 + +0.6 128,692 + -0.7 128,714 + -1.5 128,722 - -0.5 128,767 + +0.2 128,826 - CSW01_00680 0.13 +1.5 128,903 + CSW01_00680 0.23 +1.2 128,904 + CSW01_00680 0.23 +0.3 128,905 + CSW01_00680 0.23 -0.2 128,912 - CSW01_00680 0.24 -0.1 128,920 - CSW01_00680 0.25 +0.2 128,932 - CSW01_00680 0.26 +0.6 128,932 - CSW01_00680 0.26 -0.7 128,959 + CSW01_00680 0.29 -2.6 128,964 + CSW01_00680 0.30 -1.9 128,964 + CSW01_00680 0.30 -0.4 128,965 - CSW01_00680 0.30 -1.9 128,972 - CSW01_00680 0.31 -1.7 128,979 - CSW01_00680 0.32 +1.1 128,979 - CSW01_00680 0.32 +1.2 129,029 + CSW01_00680 0.38 +0.8 129,029 + CSW01_00680 0.38 -0.5 129,029 + CSW01_00680 0.38 -0.8 129,029 + CSW01_00680 0.38 +0.8 129,037 - CSW01_00680 0.39 +1.3 129,037 - CSW01_00680 0.39 +1.3 129,039 + CSW01_00680 0.39 +0.2 129,124 - CSW01_00680 0.49 -2.3 129,202 + CSW01_00680 0.59 -0.5 129,210 - CSW01_00680 0.60 -2.2 129,301 - CSW01_00680 0.71 +1.6 129,320 - CSW01_00680 0.73 -3.1 129,382 - CSW01_00680 0.80 +1.9 129,417 - CSW01_00680 0.85 -3.1 129,582 + +0.8 129,582 + +0.1 129,582 + +0.2 129,582 + -2.1 129,582 + -3.4 129,582 + -3.4 129,589 - -3.4 129,590 - -0.4 129,590 - -1.7 129,590 - -2.6 129,590 - -3.5 129,590 - -1.5 129,597 - +0.9 129,600 - +0.4 129,605 - -2.8 129,605 - +0.4 129,605 - +1.0 129,685 - -3.4 129,687 + -3.2 129,695 - +2.1 129,695 - -1.3 129,787 + CSW01_00685 0.13 -1.6 129,787 + CSW01_00685 0.13 +0.8 129,787 + CSW01_00685 0.13 -0.4 129,845 + CSW01_00685 0.18 +0.1 129,845 + CSW01_00685 0.18 +0.3 129,922 + CSW01_00685 0.26 -0.3 129,933 + CSW01_00685 0.27 -0.7 129,933 + CSW01_00685 0.27 -0.3 129,933 + CSW01_00685 0.27 -1.2 129,933 + CSW01_00685 0.27 -2.9 129,933 + CSW01_00685 0.27 +2.7 129,933 + CSW01_00685 0.27 -1.9 129,933 + CSW01_00685 0.27 -0.5 129,933 + CSW01_00685 0.27 +1.1 129,933 + CSW01_00685 0.27 -2.0 129,933 + CSW01_00685 0.27 -1.0 129,933 + CSW01_00685 0.27 -0.1 129,933 + CSW01_00685 0.27 +0.3 129,941 - CSW01_00685 0.28 +1.2 129,941 - CSW01_00685 0.28 +0.8 129,941 - CSW01_00685 0.28 -0.6 129,941 - CSW01_00685 0.28 +1.7 129,941 - CSW01_00685 0.28 +3.0 129,941 - CSW01_00685 0.28 -0.2 129,941 - CSW01_00685 0.28 +0.1 129,941 - CSW01_00685 0.28 -2.6 129,941 - CSW01_00685 0.28 +0.3 129,941 - CSW01_00685 0.28 +1.5 129,941 - CSW01_00685 0.28 -0.9 129,941 - CSW01_00685 0.28 -3.4 129,941 - CSW01_00685 0.28 +0.4 129,941 - CSW01_00685 0.28 +0.2 129,941 - CSW01_00685 0.28 -3.0 129,945 + CSW01_00685 0.28 -0.9 129,980 + CSW01_00685 0.32 +0.2 129,992 + CSW01_00685 0.33 -1.5 129,992 + CSW01_00685 0.33 +3.0 129,992 + CSW01_00685 0.33 -0.8 130,000 - CSW01_00685 0.34 +1.0 130,058 + CSW01_00685 0.39 -1.6 130,066 - CSW01_00685 0.40 +0.5 130,066 - CSW01_00685 0.40 -2.8 130,066 - CSW01_00685 0.40 +0.7 130,139 + CSW01_00685 0.47 +0.6 130,139 + CSW01_00685 0.47 -0.6 130,147 - CSW01_00685 0.48 -2.0 130,154 - CSW01_00685 0.49 +0.1 130,177 + CSW01_00685 0.51 +0.3 130,177 + CSW01_00685 0.51 +0.8 130,186 + CSW01_00685 0.52 +0.2 130,187 + CSW01_00685 0.52 +0.5 130,187 + CSW01_00685 0.52 -0.8 130,187 + CSW01_00685 0.52 -2.8 130,187 + CSW01_00685 0.52 +0.7 130,194 - CSW01_00685 0.53 +1.1 130,195 - CSW01_00685 0.53 -1.6 130,195 - CSW01_00685 0.53 +0.4 130,222 + CSW01_00685 0.55 -0.1 130,222 + CSW01_00685 0.55 +0.6 130,222 + CSW01_00685 0.55 +1.0 130,222 + CSW01_00685 0.55 -1.2 130,222 + CSW01_00685 0.55 +0.5 130,222 + CSW01_00685 0.55 -0.1 130,222 + CSW01_00685 0.55 -1.0 130,222 + CSW01_00685 0.55 +1.0 130,230 - CSW01_00685 0.56 -2.4 130,230 - CSW01_00685 0.56 -2.7 130,230 - CSW01_00685 0.56 -1.8 130,230 - CSW01_00685 0.56 +0.6 130,230 - CSW01_00685 0.56 -2.3 130,230 - CSW01_00685 0.56 -2.0 130,230 - CSW01_00685 0.56 +0.2 130,230 - CSW01_00685 0.56 -4.4 130,230 - CSW01_00685 0.56 +1.1 130,230 - CSW01_00685 0.56 +1.7 130,230 - CSW01_00685 0.56 +0.0 130,328 + CSW01_00685 0.66 +1.1 130,347 + CSW01_00685 0.68 +0.6 130,383 - CSW01_00685 0.71 +0.9 130,401 - CSW01_00685 0.73 +0.5 130,475 + CSW01_00685 0.80 -0.5 130,483 - CSW01_00685 0.81 +0.1 130,520 + CSW01_00685 0.85 -5.2
Or see this region's nucleotide sequence