Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00545

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00535 and CSW01_00540 are separated by 80 nucleotidesCSW01_00540 and CSW01_00545 are separated by 464 nucleotidesCSW01_00545 and CSW01_00550 are separated by 176 nucleotides CSW01_00535: CSW01_00535 - thiosulfate sulfurtransferase, at 98,787 to 99,107 _00535 CSW01_00540: CSW01_00540 - hypothetical protein, at 99,188 to 99,403 _00540 CSW01_00545: CSW01_00545 - TatD family deoxyribonuclease, at 99,868 to 100,635 _00545 CSW01_00550: CSW01_00550 - porphobilinogen synthase, at 100,812 to 101,855 _00550 Position (kb) 99 100 101Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 98.877 kb on + strand, within CSW01_00535at 98.877 kb on + strand, within CSW01_00535at 98.885 kb on - strand, within CSW01_00535at 98.971 kb on - strand, within CSW01_00535at 98.971 kb on - strand, within CSW01_00535at 98.975 kb on - strand, within CSW01_00535at 99.117 kb on - strandat 99.153 kb on + strandat 99.169 kb on + strandat 99.180 kb on + strandat 99.180 kb on + strandat 99.180 kb on + strandat 99.180 kb on + strandat 99.180 kb on + strandat 99.221 kb on + strand, within CSW01_00540at 99.224 kb on - strand, within CSW01_00540at 99.345 kb on + strand, within CSW01_00540at 99.512 kb on + strandat 99.581 kb on - strandat 99.585 kb on + strandat 99.585 kb on + strandat 99.672 kb on + strandat 99.680 kb on - strandat 99.680 kb on - strandat 99.683 kb on + strandat 99.698 kb on + strandat 99.698 kb on + strandat 99.879 kb on + strandat 99.938 kb on + strandat 99.938 kb on + strandat 99.938 kb on + strandat 99.938 kb on + strandat 99.946 kb on - strand, within CSW01_00545at 99.981 kb on - strand, within CSW01_00545at 100.028 kb on - strand, within CSW01_00545at 100.072 kb on + strand, within CSW01_00545at 100.167 kb on + strand, within CSW01_00545at 100.185 kb on - strand, within CSW01_00545at 100.211 kb on + strand, within CSW01_00545at 100.211 kb on + strand, within CSW01_00545at 100.219 kb on - strand, within CSW01_00545at 100.219 kb on - strand, within CSW01_00545at 100.242 kb on + strand, within CSW01_00545at 100.250 kb on - strand, within CSW01_00545at 100.250 kb on - strand, within CSW01_00545at 100.278 kb on + strand, within CSW01_00545at 100.291 kb on + strand, within CSW01_00545at 100.352 kb on + strand, within CSW01_00545at 100.398 kb on + strand, within CSW01_00545at 100.415 kb on - strand, within CSW01_00545at 100.427 kb on - strand, within CSW01_00545at 100.429 kb on + strand, within CSW01_00545at 100.434 kb on + strand, within CSW01_00545at 100.442 kb on + strand, within CSW01_00545at 100.450 kb on - strand, within CSW01_00545at 100.453 kb on - strand, within CSW01_00545at 100.453 kb on - strand, within CSW01_00545at 100.478 kb on + strand, within CSW01_00545at 100.481 kb on - strand, within CSW01_00545at 100.483 kb on + strand, within CSW01_00545at 100.529 kb on - strand, within CSW01_00545at 100.555 kb on + strand, within CSW01_00545at 100.559 kb on + strandat 100.563 kb on - strandat 100.567 kb on - strandat 100.578 kb on + strandat 100.607 kb on + strandat 100.615 kb on - strandat 100.633 kb on + strandat 100.646 kb on - strandat 100.667 kb on + strandat 100.667 kb on + strandat 100.675 kb on - strandat 100.675 kb on - strandat 100.756 kb on + strandat 100.756 kb on + strandat 100.756 kb on + strandat 100.759 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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98,877 + CSW01_00535 0.28 +0.6
98,877 + CSW01_00535 0.28 -2.9
98,885 - CSW01_00535 0.31 -4.3
98,971 - CSW01_00535 0.57 -3.3
98,971 - CSW01_00535 0.57 +0.0
98,975 - CSW01_00535 0.59 +1.6
99,117 - +1.7
99,153 + -3.9
99,169 + +0.1
99,180 + +1.1
99,180 + +1.1
99,180 + -0.2
99,180 + -0.8
99,180 + +1.6
99,221 + CSW01_00540 0.15 -0.7
99,224 - CSW01_00540 0.17 +1.7
99,345 + CSW01_00540 0.73 +1.0
99,512 + +0.5
99,581 - +0.1
99,585 + +0.7
99,585 + +0.9
99,672 + +1.3
99,680 - -3.9
99,680 - +1.2
99,683 + -0.4
99,698 + +1.1
99,698 + +1.2
99,879 + -1.5
99,938 + +0.2
99,938 + -0.5
99,938 + -0.0
99,938 + +0.3
99,946 - CSW01_00545 0.10 +0.4
99,981 - CSW01_00545 0.15 -4.0
100,028 - CSW01_00545 0.21 -0.4
100,072 + CSW01_00545 0.27 +0.4
100,167 + CSW01_00545 0.39 -1.4
100,185 - CSW01_00545 0.41 +2.5
100,211 + CSW01_00545 0.45 +0.1
100,211 + CSW01_00545 0.45 -1.0
100,219 - CSW01_00545 0.46 +0.8
100,219 - CSW01_00545 0.46 -0.6
100,242 + CSW01_00545 0.49 -0.5
100,250 - CSW01_00545 0.50 -2.6
100,250 - CSW01_00545 0.50 -2.0
100,278 + CSW01_00545 0.53 -1.7
100,291 + CSW01_00545 0.55 +0.7
100,352 + CSW01_00545 0.63 -0.4
100,398 + CSW01_00545 0.69 -1.6
100,415 - CSW01_00545 0.71 +0.7
100,427 - CSW01_00545 0.73 -2.5
100,429 + CSW01_00545 0.73 -0.5
100,434 + CSW01_00545 0.74 +0.5
100,442 + CSW01_00545 0.75 -0.7
100,450 - CSW01_00545 0.76 -0.4
100,453 - CSW01_00545 0.76 -1.1
100,453 - CSW01_00545 0.76 -1.1
100,478 + CSW01_00545 0.79 -0.1
100,481 - CSW01_00545 0.80 +1.1
100,483 + CSW01_00545 0.80 -0.5
100,529 - CSW01_00545 0.86 -1.6
100,555 + CSW01_00545 0.89 -0.2
100,559 + +1.1
100,563 - -4.7
100,567 - +0.0
100,578 + -0.3
100,607 + +0.3
100,615 - -0.4
100,633 + -2.6
100,646 - -1.4
100,667 + -1.5
100,667 + -3.5
100,675 - +0.3
100,675 - +1.0
100,756 + +1.4
100,756 + +1.0
100,756 + +0.6
100,759 - +0.8

Or see this region's nucleotide sequence