Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00105 and CSW01_00110 are separated by 415 nucleotides CSW01_00110 and CSW01_00115 are separated by 105 nucleotides CSW01_00115 and CSW01_00120 are separated by 86 nucleotides CSW01_00120 and CSW01_00125 are separated by 120 nucleotides
CSW01_00105: CSW01_00105 - glycine--tRNA ligase subunit alpha, at 18,950 to 19,867
_00105
CSW01_00110: CSW01_00110 - hypothetical protein, at 20,283 to 20,837
_00110
CSW01_00115: CSW01_00115 - hypothetical protein, at 20,943 to 21,200
_00115
CSW01_00120: CSW01_00120 - sulfurtransferase TusA, at 21,287 to 21,535
_00120
CSW01_00125: CSW01_00125 - hypothetical protein, at 21,656 to 21,856
_00125
Position (kb) 20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 20.049 kb on - strand at 20.206 kb on - strand at 20.221 kb on + strand at 20.269 kb on + strand at 20.274 kb on - strand at 20.308 kb on + strand at 20.315 kb on + strand at 20.318 kb on - strand at 20.346 kb on + strand, within CSW01_00110 at 20.346 kb on + strand, within CSW01_00110 at 20.382 kb on - strand, within CSW01_00110 at 20.425 kb on + strand, within CSW01_00110 at 20.433 kb on - strand, within CSW01_00110 at 20.433 kb on - strand, within CSW01_00110 at 20.448 kb on + strand, within CSW01_00110 at 20.500 kb on - strand, within CSW01_00110 at 20.565 kb on + strand, within CSW01_00110 at 20.567 kb on - strand, within CSW01_00110 at 20.701 kb on + strand, within CSW01_00110 at 20.708 kb on - strand, within CSW01_00110 at 20.851 kb on + strand at 20.851 kb on + strand at 20.851 kb on + strand at 20.851 kb on + strand at 20.859 kb on - strand at 20.859 kb on - strand at 20.859 kb on - strand at 20.859 kb on - strand at 20.859 kb on - strand at 20.859 kb on - strand at 20.859 kb on - strand at 20.859 kb on - strand at 20.861 kb on + strand at 20.907 kb on + strand at 20.907 kb on + strand at 20.907 kb on + strand at 20.907 kb on + strand at 20.907 kb on + strand at 20.907 kb on + strand at 20.907 kb on + strand at 20.915 kb on - strand at 20.915 kb on - strand at 20.917 kb on + strand at 20.917 kb on + strand at 20.917 kb on + strand at 20.919 kb on + strand at 20.919 kb on + strand at 20.925 kb on + strand at 20.925 kb on + strand at 20.925 kb on - strand at 20.927 kb on - strand at 20.933 kb on - strand at 20.938 kb on + strand at 20.938 kb on + strand at 20.938 kb on + strand at 20.939 kb on - strand at 20.946 kb on - strand at 20.946 kb on - strand at 20.946 kb on - strand at 20.946 kb on - strand at 20.946 kb on - strand at 20.983 kb on - strand, within CSW01_00115 at 21.004 kb on - strand, within CSW01_00115 at 21.006 kb on + strand, within CSW01_00115 at 21.006 kb on + strand, within CSW01_00115 at 21.006 kb on + strand, within CSW01_00115 at 21.006 kb on + strand, within CSW01_00115 at 21.006 kb on + strand, within CSW01_00115 at 21.006 kb on + strand, within CSW01_00115 at 21.014 kb on - strand, within CSW01_00115 at 21.014 kb on - strand, within CSW01_00115 at 21.014 kb on - strand, within CSW01_00115 at 21.014 kb on - strand, within CSW01_00115 at 21.035 kb on - strand, within CSW01_00115 at 21.103 kb on + strand, within CSW01_00115 at 21.103 kb on + strand, within CSW01_00115 at 21.116 kb on - strand, within CSW01_00115 at 21.156 kb on + strand, within CSW01_00115 at 21.187 kb on - strand at 21.195 kb on + strand at 21.251 kb on + strand at 21.544 kb on - strand at 21.549 kb on - strand at 21.572 kb on - strand at 21.671 kb on + strand at 21.679 kb on - strand, within CSW01_00125 at 21.689 kb on + strand, within CSW01_00125 at 21.731 kb on + strand, within CSW01_00125 at 21.746 kb on - strand, within CSW01_00125 at 21.751 kb on - strand, within CSW01_00125 at 21.773 kb on + strand, within CSW01_00125 at 21.773 kb on + strand, within CSW01_00125 at 21.773 kb on + strand, within CSW01_00125 at 21.773 kb on + strand, within CSW01_00125 at 21.775 kb on + strand, within CSW01_00125 at 21.775 kb on + strand, within CSW01_00125 at 21.780 kb on + strand, within CSW01_00125 at 21.781 kb on - strand, within CSW01_00125 at 21.781 kb on - strand, within CSW01_00125 at 21.781 kb on - strand, within CSW01_00125 at 21.781 kb on - strand, within CSW01_00125 at 21.783 kb on - strand, within CSW01_00125 at 21.783 kb on - strand, within CSW01_00125 at 21.783 kb on - strand, within CSW01_00125 at 21.783 kb on - strand, within CSW01_00125 at 21.788 kb on + strand, within CSW01_00125 at 21.829 kb on + strand, within CSW01_00125 at 21.830 kb on - strand, within CSW01_00125 at 21.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 20,049 - -1.2 20,206 - -1.8 20,221 + -0.1 20,269 + +0.0 20,274 - -0.9 20,308 + -0.0 20,315 + +0.8 20,318 - -0.4 20,346 + CSW01_00110 0.11 -0.8 20,346 + CSW01_00110 0.11 -0.4 20,382 - CSW01_00110 0.18 -1.8 20,425 + CSW01_00110 0.26 -0.7 20,433 - CSW01_00110 0.27 -3.1 20,433 - CSW01_00110 0.27 -2.5 20,448 + CSW01_00110 0.30 +0.3 20,500 - CSW01_00110 0.39 -3.3 20,565 + CSW01_00110 0.51 +0.8 20,567 - CSW01_00110 0.51 -2.1 20,701 + CSW01_00110 0.75 -0.8 20,708 - CSW01_00110 0.77 +0.7 20,851 + -3.2 20,851 + +0.3 20,851 + +1.0 20,851 + +0.6 20,859 - +1.2 20,859 - +0.2 20,859 - +0.6 20,859 - -0.4 20,859 - -2.6 20,859 - -0.3 20,859 - +0.6 20,859 - -0.0 20,861 + -0.3 20,907 + -1.6 20,907 + -1.8 20,907 + -1.2 20,907 + -1.6 20,907 + +3.2 20,907 + +0.5 20,907 + -1.3 20,915 - -0.2 20,915 - -1.4 20,917 + +0.5 20,917 + -1.3 20,917 + -2.8 20,919 + -0.8 20,919 + +0.9 20,925 + +0.9 20,925 + +1.5 20,925 - -1.2 20,927 - -0.1 20,933 - -0.4 20,938 + -0.9 20,938 + +0.4 20,938 + -3.4 20,939 - +0.2 20,946 - -3.3 20,946 - +2.5 20,946 - +1.0 20,946 - -0.8 20,946 - +1.2 20,983 - CSW01_00115 0.16 +0.4 21,004 - CSW01_00115 0.24 -2.6 21,006 + CSW01_00115 0.24 -2.1 21,006 + CSW01_00115 0.24 -0.0 21,006 + CSW01_00115 0.24 -2.6 21,006 + CSW01_00115 0.24 +0.2 21,006 + CSW01_00115 0.24 -0.1 21,006 + CSW01_00115 0.24 -0.6 21,014 - CSW01_00115 0.28 -1.7 21,014 - CSW01_00115 0.28 -2.0 21,014 - CSW01_00115 0.28 -0.8 21,014 - CSW01_00115 0.28 -0.6 21,035 - CSW01_00115 0.36 -2.0 21,103 + CSW01_00115 0.62 +0.9 21,103 + CSW01_00115 0.62 +1.7 21,116 - CSW01_00115 0.67 -1.2 21,156 + CSW01_00115 0.83 -0.2 21,187 - -1.9 21,195 + -0.6 21,251 + -1.4 21,544 - -0.4 21,549 - -1.2 21,572 - +2.1 21,671 + +0.4 21,679 - CSW01_00125 0.11 -0.1 21,689 + CSW01_00125 0.16 -2.2 21,731 + CSW01_00125 0.37 +0.8 21,746 - CSW01_00125 0.45 +0.4 21,751 - CSW01_00125 0.47 -0.1 21,773 + CSW01_00125 0.58 +1.6 21,773 + CSW01_00125 0.58 +1.3 21,773 + CSW01_00125 0.58 -1.8 21,773 + CSW01_00125 0.58 +0.6 21,775 + CSW01_00125 0.59 +3.8 21,775 + CSW01_00125 0.59 -1.2 21,780 + CSW01_00125 0.62 +0.4 21,781 - CSW01_00125 0.62 +0.2 21,781 - CSW01_00125 0.62 +0.4 21,781 - CSW01_00125 0.62 -0.1 21,781 - CSW01_00125 0.62 -0.3 21,783 - CSW01_00125 0.63 +1.3 21,783 - CSW01_00125 0.63 -0.3 21,783 - CSW01_00125 0.63 -2.5 21,783 - CSW01_00125 0.63 +1.2 21,788 + CSW01_00125 0.66 -2.4 21,829 + CSW01_00125 0.86 +1.2 21,830 - CSW01_00125 0.87 -1.2 21,837 + -3.8
Or see this region's nucleotide sequence