Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4430

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4429 and Ac3H11_4430 are separated by 213 nucleotidesAc3H11_4430 and Ac3H11_4431 are separated by 19 nucleotides Ac3H11_4429 - Glutamine synthetase type I (EC 6.3.1.2), at 5,986 to 7,479 _4429 Ac3H11_4430 - FIG01198927: hypothetical protein, at 7,693 to 8,205 _4430 Ac3H11_4431 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 8,225 to 9,313 _4431 Position (kb) 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1at 7.477 kb on + strandat 7.477 kb on + strandat 7.478 kb on - strandat 7.478 kb on - strandat 7.478 kb on - strandat 7.478 kb on - strandat 7.478 kb on - strandat 7.598 kb on + strandat 7.599 kb on - strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.655 kb on - strandat 7.765 kb on + strand, within Ac3H11_4430at 7.766 kb on - strand, within Ac3H11_4430at 7.783 kb on + strand, within Ac3H11_4430at 7.783 kb on + strand, within Ac3H11_4430at 7.783 kb on + strand, within Ac3H11_4430at 7.783 kb on + strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 7.784 kb on - strand, within Ac3H11_4430at 8.047 kb on + strand, within Ac3H11_4430at 8.047 kb on + strand, within Ac3H11_4430at 8.047 kb on + strand, within Ac3H11_4430at 8.047 kb on + strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.048 kb on - strand, within Ac3H11_4430at 8.101 kb on + strand, within Ac3H11_4430at 8.101 kb on + strand, within Ac3H11_4430at 8.102 kb on - strand, within Ac3H11_4430at 8.203 kb on + strandat 8.203 kb on + strandat 8.203 kb on + strandat 8.203 kb on + strandat 8.203 kb on + strandat 8.204 kb on - strandat 8.562 kb on + strand, within Ac3H11_4431at 8.562 kb on + strand, within Ac3H11_4431at 8.562 kb on + strand, within Ac3H11_4431at 8.750 kb on + strand, within Ac3H11_4431at 8.750 kb on + strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.751 kb on - strand, within Ac3H11_4431at 8.924 kb on + strand, within Ac3H11_4431at 8.924 kb on + strand, within Ac3H11_4431at 8.924 kb on + strand, within Ac3H11_4431at 8.925 kb on - strand, within Ac3H11_4431at 9.170 kb on + strand, within Ac3H11_4431

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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7,477 + -0.5
7,477 + +0.1
7,478 - +0.7
7,478 - +0.7
7,478 - +0.1
7,478 - +0.5
7,478 - +1.3
7,598 + +0.8
7,599 - +0.0
7,654 + -0.3
7,654 + +0.1
7,655 - +1.6
7,765 + Ac3H11_4430 0.14 +0.1
7,766 - Ac3H11_4430 0.14 -0.3
7,783 + Ac3H11_4430 0.18 +1.1
7,783 + Ac3H11_4430 0.18 +0.9
7,783 + Ac3H11_4430 0.18 -0.3
7,783 + Ac3H11_4430 0.18 +0.6
7,784 - Ac3H11_4430 0.18 -0.1
7,784 - Ac3H11_4430 0.18 -0.1
7,784 - Ac3H11_4430 0.18 -1.1
7,784 - Ac3H11_4430 0.18 -1.6
7,784 - Ac3H11_4430 0.18 -0.3
7,784 - Ac3H11_4430 0.18 -0.2
8,047 + Ac3H11_4430 0.69 +0.2
8,047 + Ac3H11_4430 0.69 -1.7
8,047 + Ac3H11_4430 0.69 -0.3
8,047 + Ac3H11_4430 0.69 +0.7
8,048 - Ac3H11_4430 0.69 -0.6
8,048 - Ac3H11_4430 0.69 -0.4
8,048 - Ac3H11_4430 0.69 -0.3
8,048 - Ac3H11_4430 0.69 +0.7
8,048 - Ac3H11_4430 0.69 -0.2
8,101 + Ac3H11_4430 0.80 +0.6
8,101 + Ac3H11_4430 0.80 -0.2
8,102 - Ac3H11_4430 0.80 -1.1
8,203 + -0.1
8,203 + -0.0
8,203 + -0.6
8,203 + +0.7
8,203 + +0.6
8,204 - -0.0
8,562 + Ac3H11_4431 0.31 -2.4
8,562 + Ac3H11_4431 0.31 +0.2
8,562 + Ac3H11_4431 0.31 -0.7
8,750 + Ac3H11_4431 0.48 -0.8
8,750 + Ac3H11_4431 0.48 -1.4
8,751 - Ac3H11_4431 0.48 +0.4
8,751 - Ac3H11_4431 0.48 -2.9
8,751 - Ac3H11_4431 0.48 -1.8
8,751 - Ac3H11_4431 0.48 -0.7
8,751 - Ac3H11_4431 0.48 -2.3
8,751 - Ac3H11_4431 0.48 -2.1
8,924 + Ac3H11_4431 0.64 -2.0
8,924 + Ac3H11_4431 0.64 +0.4
8,924 + Ac3H11_4431 0.64 -3.0
8,925 - Ac3H11_4431 0.64 -1.5
9,170 + Ac3H11_4431 0.87 -1.1

Or see this region's nucleotide sequence