Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26425

Experiment: acetate 34 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26420 and AO353_26425 overlap by 1 nucleotidesAO353_26425 and AO353_26430 are separated by 81 nucleotidesAO353_26430 and AO353_26435 are separated by 37 nucleotides AO353_26420: AO353_26420 - hypothetical protein, at 5,793,139 to 5,794,128 _26420 AO353_26425: AO353_26425 - exonuclease, at 5,794,128 to 5,794,790 _26425 AO353_26430: AO353_26430 - hypothetical protein, at 5,794,872 to 5,795,198 _26430 AO353_26435: AO353_26435 - hypothetical protein, at 5,795,236 to 5,795,817 _26435 Position (kb) 5794 5795Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5793.181 kb on + strandat 5793.181 kb on + strandat 5793.181 kb on + strandat 5793.181 kb on + strandat 5793.181 kb on + strandat 5793.181 kb on + strandat 5793.332 kb on + strand, within AO353_26420at 5793.332 kb on + strand, within AO353_26420at 5793.333 kb on - strand, within AO353_26420at 5793.333 kb on - strand, within AO353_26420at 5793.409 kb on + strand, within AO353_26420at 5793.409 kb on + strand, within AO353_26420at 5793.409 kb on + strand, within AO353_26420at 5793.409 kb on + strand, within AO353_26420at 5793.409 kb on + strand, within AO353_26420at 5793.409 kb on + strand, within AO353_26420at 5793.410 kb on - strand, within AO353_26420at 5793.410 kb on - strand, within AO353_26420at 5793.410 kb on - strand, within AO353_26420at 5793.410 kb on - strandat 5793.435 kb on - strand, within AO353_26420at 5793.525 kb on + strand, within AO353_26420at 5793.526 kb on - strand, within AO353_26420at 5793.696 kb on + strand, within AO353_26420at 5793.696 kb on + strand, within AO353_26420at 5793.697 kb on - strand, within AO353_26420at 5793.697 kb on - strand, within AO353_26420at 5793.697 kb on - strand, within AO353_26420at 5793.697 kb on - strand, within AO353_26420at 5793.697 kb on - strand, within AO353_26420at 5793.734 kb on - strand, within AO353_26420at 5793.790 kb on + strand, within AO353_26420at 5793.790 kb on + strand, within AO353_26420at 5793.790 kb on + strand, within AO353_26420at 5793.791 kb on - strand, within AO353_26420at 5793.792 kb on + strand, within AO353_26420at 5793.793 kb on - strand, within AO353_26420at 5793.846 kb on + strand, within AO353_26420at 5793.846 kb on + strand, within AO353_26420at 5793.846 kb on + strand, within AO353_26420at 5793.846 kb on + strand, within AO353_26420at 5793.846 kb on + strand, within AO353_26420at 5793.847 kb on - strand, within AO353_26420at 5793.847 kb on - strand, within AO353_26420at 5793.874 kb on - strand, within AO353_26420at 5793.971 kb on - strand, within AO353_26420at 5793.971 kb on - strand, within AO353_26420at 5794.000 kb on - strand, within AO353_26420at 5794.075 kb on - strandat 5794.126 kb on + strandat 5794.200 kb on - strand, within AO353_26425at 5794.250 kb on + strand, within AO353_26425at 5794.250 kb on + strand, within AO353_26425at 5794.269 kb on + strandat 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.269 kb on + strand, within AO353_26425at 5794.270 kb on - strand, within AO353_26425at 5794.270 kb on - strand, within AO353_26425at 5794.270 kb on - strand, within AO353_26425at 5794.270 kb on - strand, within AO353_26425at 5794.270 kb on - strand, within AO353_26425at 5794.336 kb on + strand, within AO353_26425at 5794.377 kb on + strand, within AO353_26425at 5794.434 kb on + strand, within AO353_26425at 5794.435 kb on - strand, within AO353_26425at 5794.435 kb on - strand, within AO353_26425at 5794.516 kb on + strand, within AO353_26425at 5794.517 kb on - strand, within AO353_26425at 5794.517 kb on - strand, within AO353_26425at 5794.517 kb on - strand, within AO353_26425at 5794.517 kb on - strand, within AO353_26425at 5794.517 kb on - strand, within AO353_26425at 5794.541 kb on + strand, within AO353_26425at 5794.541 kb on + strand, within AO353_26425at 5794.542 kb on - strand, within AO353_26425at 5794.542 kb on - strand, within AO353_26425at 5794.542 kb on - strand, within AO353_26425at 5794.542 kb on - strand, within AO353_26425at 5794.650 kb on + strand, within AO353_26425at 5794.650 kb on + strand, within AO353_26425at 5794.680 kb on + strand, within AO353_26425at 5794.680 kb on + strand, within AO353_26425at 5794.857 kb on + strandat 5794.857 kb on + strandat 5794.857 kb on + strandat 5794.857 kb on + strandat 5794.857 kb on + strandat 5794.857 kb on + strandat 5794.857 kb on + strandat 5794.857 kb on + strandat 5794.857 kb on + strandat 5794.858 kb on - strandat 5794.858 kb on - strandat 5794.858 kb on - strandat 5794.858 kb on - strandat 5794.858 kb on - strandat 5794.858 kb on - strandat 5794.858 kb on - strandat 5794.926 kb on + strand, within AO353_26430at 5795.014 kb on + strand, within AO353_26430at 5795.014 kb on + strand, within AO353_26430at 5795.014 kb on + strand, within AO353_26430at 5795.014 kb on + strand, within AO353_26430at 5795.014 kb on + strand, within AO353_26430at 5795.015 kb on - strand, within AO353_26430at 5795.063 kb on + strand, within AO353_26430at 5795.064 kb on - strand, within AO353_26430at 5795.073 kb on + strand, within AO353_26430at 5795.074 kb on - strandat 5795.074 kb on - strand, within AO353_26430at 5795.074 kb on - strand, within AO353_26430at 5795.111 kb on + strand, within AO353_26430at 5795.129 kb on + strand, within AO353_26430at 5795.129 kb on + strand, within AO353_26430at 5795.204 kb on + strandat 5795.204 kb on + strandat 5795.204 kb on + strandat 5795.205 kb on - strandat 5795.205 kb on - strandat 5795.205 kb on - strandat 5795.211 kb on + strandat 5795.224 kb on + strandat 5795.224 kb on + strandat 5795.224 kb on + strandat 5795.224 kb on + strandat 5795.225 kb on - strandat 5795.225 kb on - strandat 5795.225 kb on - strandat 5795.225 kb on - strandat 5795.237 kb on + strandat 5795.237 kb on + strandat 5795.238 kb on - strandat 5795.242 kb on - strandat 5795.279 kb on + strandat 5795.279 kb on + strandat 5795.279 kb on + strandat 5795.279 kb on + strandat 5795.280 kb on - strandat 5795.280 kb on - strandat 5795.281 kb on + strandat 5795.281 kb on + strandat 5795.281 kb on + strandat 5795.282 kb on - strandat 5795.282 kb on - strandat 5795.282 kb on - strandat 5795.282 kb on - strandat 5795.282 kb on - strandat 5795.282 kb on - strandat 5795.285 kb on + strandat 5795.285 kb on + strandat 5795.285 kb on + strandat 5795.285 kb on + strandat 5795.286 kb on - strandat 5795.286 kb on - strandat 5795.286 kb on - strandat 5795.286 kb on - strandat 5795.286 kb on - strandat 5795.294 kb on + strandat 5795.295 kb on - strand, within AO353_26435at 5795.297 kb on + strand, within AO353_26435at 5795.298 kb on - strand, within AO353_26435at 5795.298 kb on - strand, within AO353_26435at 5795.333 kb on + strand, within AO353_26435at 5795.333 kb on + strand, within AO353_26435at 5795.333 kb on + strand, within AO353_26435at 5795.333 kb on + strand, within AO353_26435at 5795.334 kb on - strand, within AO353_26435at 5795.359 kb on + strand, within AO353_26435at 5795.359 kb on + strand, within AO353_26435at 5795.360 kb on - strand, within AO353_26435at 5795.365 kb on - strand, within AO353_26435at 5795.400 kb on + strand, within AO353_26435at 5795.400 kb on + strand, within AO353_26435at 5795.400 kb on + strand, within AO353_26435at 5795.401 kb on - strand, within AO353_26435at 5795.410 kb on - strand, within AO353_26435at 5795.434 kb on - strand, within AO353_26435at 5795.469 kb on + strand, within AO353_26435at 5795.470 kb on - strand, within AO353_26435at 5795.470 kb on - strand, within AO353_26435at 5795.470 kb on - strand, within AO353_26435at 5795.470 kb on - strand, within AO353_26435at 5795.514 kb on + strand, within AO353_26435at 5795.514 kb on + strand, within AO353_26435at 5795.515 kb on - strand, within AO353_26435at 5795.515 kb on - strand, within AO353_26435at 5795.515 kb on - strand, within AO353_26435at 5795.515 kb on - strand, within AO353_26435at 5795.563 kb on + strand, within AO353_26435at 5795.564 kb on - strand, within AO353_26435at 5795.582 kb on - strand, within AO353_26435at 5795.582 kb on - strandat 5795.582 kb on - strand, within AO353_26435at 5795.588 kb on - strand, within AO353_26435at 5795.632 kb on + strandat 5795.632 kb on + strand, within AO353_26435at 5795.633 kb on - strand, within AO353_26435at 5795.633 kb on - strand, within AO353_26435at 5795.633 kb on - strand, within AO353_26435at 5795.633 kb on - strand, within AO353_26435at 5795.633 kb on - strand, within AO353_26435at 5795.633 kb on - strand, within AO353_26435at 5795.635 kb on + strand, within AO353_26435at 5795.636 kb on - strand, within AO353_26435at 5795.648 kb on - strand, within AO353_26435at 5795.738 kb on - strand, within AO353_26435at 5795.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 34 mM
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5,793,181 + -1.0
5,793,181 + +0.3
5,793,181 + -0.4
5,793,181 + +0.3
5,793,181 + +1.2
5,793,181 + -0.4
5,793,332 + AO353_26420 0.19 +1.7
5,793,332 + AO353_26420 0.19 -0.3
5,793,333 - AO353_26420 0.20 +1.7
5,793,333 - AO353_26420 0.20 -1.1
5,793,409 + AO353_26420 0.27 -1.6
5,793,409 + AO353_26420 0.27 +0.4
5,793,409 + AO353_26420 0.27 -0.8
5,793,409 + AO353_26420 0.27 +0.6
5,793,409 + AO353_26420 0.27 -0.8
5,793,409 + AO353_26420 0.27 -0.7
5,793,410 - AO353_26420 0.27 +0.3
5,793,410 - AO353_26420 0.27 -1.6
5,793,410 - AO353_26420 0.27 +0.7
5,793,410 - +0.7
5,793,435 - AO353_26420 0.30 +2.3
5,793,525 + AO353_26420 0.39 -1.3
5,793,526 - AO353_26420 0.39 +0.2
5,793,696 + AO353_26420 0.56 -0.5
5,793,696 + AO353_26420 0.56 +0.7
5,793,697 - AO353_26420 0.56 +0.0
5,793,697 - AO353_26420 0.56 -0.4
5,793,697 - AO353_26420 0.56 -0.7
5,793,697 - AO353_26420 0.56 -0.8
5,793,697 - AO353_26420 0.56 -0.8
5,793,734 - AO353_26420 0.60 -0.3
5,793,790 + AO353_26420 0.66 +0.2
5,793,790 + AO353_26420 0.66 +0.3
5,793,790 + AO353_26420 0.66 -1.1
5,793,791 - AO353_26420 0.66 +1.7
5,793,792 + AO353_26420 0.66 +0.5
5,793,793 - AO353_26420 0.66 +0.2
5,793,846 + AO353_26420 0.71 +0.7
5,793,846 + AO353_26420 0.71 -2.1
5,793,846 + AO353_26420 0.71 +1.3
5,793,846 + AO353_26420 0.71 +1.0
5,793,846 + AO353_26420 0.71 +2.3
5,793,847 - AO353_26420 0.72 -0.3
5,793,847 - AO353_26420 0.72 +0.5
5,793,874 - AO353_26420 0.74 +1.6
5,793,971 - AO353_26420 0.84 -0.8
5,793,971 - AO353_26420 0.84 +1.5
5,794,000 - AO353_26420 0.87 +0.7
5,794,075 - +0.7
5,794,126 + +0.0
5,794,200 - AO353_26425 0.11 -0.7
5,794,250 + AO353_26425 0.18 +0.3
5,794,250 + AO353_26425 0.18 +0.6
5,794,269 + -0.3
5,794,269 + AO353_26425 0.21 +0.3
5,794,269 + AO353_26425 0.21 +1.6
5,794,269 + AO353_26425 0.21 +0.0
5,794,269 + AO353_26425 0.21 -0.1
5,794,269 + AO353_26425 0.21 +0.4
5,794,269 + AO353_26425 0.21 -0.1
5,794,269 + AO353_26425 0.21 -0.3
5,794,269 + AO353_26425 0.21 -0.3
5,794,269 + AO353_26425 0.21 -1.7
5,794,269 + AO353_26425 0.21 -0.3
5,794,269 + AO353_26425 0.21 -2.3
5,794,269 + AO353_26425 0.21 -0.8
5,794,269 + AO353_26425 0.21 -1.1
5,794,270 - AO353_26425 0.21 -0.6
5,794,270 - AO353_26425 0.21 -0.3
5,794,270 - AO353_26425 0.21 +0.0
5,794,270 - AO353_26425 0.21 +0.4
5,794,270 - AO353_26425 0.21 -2.3
5,794,336 + AO353_26425 0.31 -0.1
5,794,377 + AO353_26425 0.38 +0.3
5,794,434 + AO353_26425 0.46 +0.0
5,794,435 - AO353_26425 0.46 -1.1
5,794,435 - AO353_26425 0.46 +0.0
5,794,516 + AO353_26425 0.59 +0.0
5,794,517 - AO353_26425 0.59 -1.6
5,794,517 - AO353_26425 0.59 -1.6
5,794,517 - AO353_26425 0.59 -1.0
5,794,517 - AO353_26425 0.59 -0.3
5,794,517 - AO353_26425 0.59 -0.7
5,794,541 + AO353_26425 0.62 -0.8
5,794,541 + AO353_26425 0.62 +0.7
5,794,542 - AO353_26425 0.62 -0.7
5,794,542 - AO353_26425 0.62 -1.8
5,794,542 - AO353_26425 0.62 +0.6
5,794,542 - AO353_26425 0.62 +0.0
5,794,650 + AO353_26425 0.79 +0.5
5,794,650 + AO353_26425 0.79 +0.4
5,794,680 + AO353_26425 0.83 -1.1
5,794,680 + AO353_26425 0.83 -2.1
5,794,857 + -1.1
5,794,857 + +2.3
5,794,857 + +0.4
5,794,857 + +0.4
5,794,857 + -1.3
5,794,857 + -0.1
5,794,857 + +1.6
5,794,857 + +3.6
5,794,857 + -1.2
5,794,858 - +0.3
5,794,858 - +2.3
5,794,858 - +0.1
5,794,858 - +0.3
5,794,858 - -0.5
5,794,858 - +0.7
5,794,858 - +0.0
5,794,926 + AO353_26430 0.17 +2.1
5,795,014 + AO353_26430 0.43 -0.3
5,795,014 + AO353_26430 0.43 -1.3
5,795,014 + AO353_26430 0.43 +1.2
5,795,014 + AO353_26430 0.43 +2.1
5,795,014 + AO353_26430 0.43 -1.4
5,795,015 - AO353_26430 0.44 -0.3
5,795,063 + AO353_26430 0.58 +0.6
5,795,064 - AO353_26430 0.59 -0.8
5,795,073 + AO353_26430 0.61 -0.5
5,795,074 - +2.1
5,795,074 - AO353_26430 0.62 -0.7
5,795,074 - AO353_26430 0.62 -1.3
5,795,111 + AO353_26430 0.73 +1.7
5,795,129 + AO353_26430 0.79 -0.3
5,795,129 + AO353_26430 0.79 -1.6
5,795,204 + +0.7
5,795,204 + +0.2
5,795,204 + -0.8
5,795,205 - +2.5
5,795,205 - -0.8
5,795,205 - -0.3
5,795,211 + -0.3
5,795,224 + +0.0
5,795,224 + -0.8
5,795,224 + +2.1
5,795,224 + +2.1
5,795,225 - -0.7
5,795,225 - +0.9
5,795,225 - +0.3
5,795,225 - -0.1
5,795,237 + -0.7
5,795,237 + +2.7
5,795,238 - +0.3
5,795,242 - -0.8
5,795,279 + +0.9
5,795,279 + -1.4
5,795,279 + -1.8
5,795,279 + +0.7
5,795,280 - +0.9
5,795,280 - +0.1
5,795,281 + +0.2
5,795,281 + -0.3
5,795,281 + -1.4
5,795,282 - +0.7
5,795,282 - +3.3
5,795,282 - -0.6
5,795,282 - +0.7
5,795,282 - -2.2
5,795,282 - +0.2
5,795,285 + -1.1
5,795,285 + +1.3
5,795,285 + +1.1
5,795,285 + -0.1
5,795,286 - -0.8
5,795,286 - +0.6
5,795,286 - -1.7
5,795,286 - +0.0
5,795,286 - +1.0
5,795,294 + +0.5
5,795,295 - AO353_26435 0.10 +0.3
5,795,297 + AO353_26435 0.10 -1.3
5,795,298 - AO353_26435 0.11 -0.1
5,795,298 - AO353_26435 0.11 +0.2
5,795,333 + AO353_26435 0.17 +3.3
5,795,333 + AO353_26435 0.17 +1.3
5,795,333 + AO353_26435 0.17 -0.6
5,795,333 + AO353_26435 0.17 +1.0
5,795,334 - AO353_26435 0.17 +0.3
5,795,359 + AO353_26435 0.21 +0.3
5,795,359 + AO353_26435 0.21 +0.0
5,795,360 - AO353_26435 0.21 -0.6
5,795,365 - AO353_26435 0.22 -0.0
5,795,400 + AO353_26435 0.28 -1.8
5,795,400 + AO353_26435 0.28 -0.9
5,795,400 + AO353_26435 0.28 -1.1
5,795,401 - AO353_26435 0.28 +0.0
5,795,410 - AO353_26435 0.30 -1.6
5,795,434 - AO353_26435 0.34 -1.0
5,795,469 + AO353_26435 0.40 +0.4
5,795,470 - AO353_26435 0.40 +0.2
5,795,470 - AO353_26435 0.40 +1.6
5,795,470 - AO353_26435 0.40 +0.3
5,795,470 - AO353_26435 0.40 +0.7
5,795,514 + AO353_26435 0.48 +0.0
5,795,514 + AO353_26435 0.48 -0.3
5,795,515 - AO353_26435 0.48 -0.6
5,795,515 - AO353_26435 0.48 +0.3
5,795,515 - AO353_26435 0.48 +2.3
5,795,515 - AO353_26435 0.48 +0.1
5,795,563 + AO353_26435 0.56 +1.3
5,795,564 - AO353_26435 0.56 +0.4
5,795,582 - AO353_26435 0.59 +1.1
5,795,582 - +0.2
5,795,582 - AO353_26435 0.59 -0.7
5,795,588 - AO353_26435 0.60 +0.0
5,795,632 + +1.3
5,795,632 + AO353_26435 0.68 +0.7
5,795,633 - AO353_26435 0.68 +1.2
5,795,633 - AO353_26435 0.68 +1.5
5,795,633 - AO353_26435 0.68 +1.3
5,795,633 - AO353_26435 0.68 -0.8
5,795,633 - AO353_26435 0.68 -1.3
5,795,633 - AO353_26435 0.68 -1.6
5,795,635 + AO353_26435 0.69 +1.0
5,795,636 - AO353_26435 0.69 +1.6
5,795,648 - AO353_26435 0.71 -0.1
5,795,738 - AO353_26435 0.86 +1.5
5,795,764 - +1.6

Or see this region's nucleotide sequence