Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23265

Experiment: acetate 34 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23260 and AO353_23265 overlap by 4 nucleotidesAO353_23265 and AO353_23270 are separated by 293 nucleotides AO353_23260: AO353_23260 - chromate transporter, at 5,101,895 to 5,103,253 _23260 AO353_23265: AO353_23265 - chromate resistance protein, at 5,103,250 to 5,104,191 _23265 AO353_23270: AO353_23270 - hypothetical protein, at 5,104,485 to 5,105,525 _23270 Position (kb) 5103 5104 5105Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5102.274 kb on + strand, within AO353_23260at 5102.275 kb on - strand, within AO353_23260at 5102.275 kb on - strand, within AO353_23260at 5102.275 kb on - strand, within AO353_23260at 5102.275 kb on - strand, within AO353_23260at 5102.308 kb on + strand, within AO353_23260at 5102.379 kb on + strand, within AO353_23260at 5102.380 kb on - strand, within AO353_23260at 5102.406 kb on + strand, within AO353_23260at 5102.406 kb on + strand, within AO353_23260at 5102.407 kb on - strand, within AO353_23260at 5102.407 kb on - strand, within AO353_23260at 5102.407 kb on - strand, within AO353_23260at 5102.407 kb on - strand, within AO353_23260at 5102.407 kb on - strand, within AO353_23260at 5102.865 kb on + strand, within AO353_23260at 5102.866 kb on - strand, within AO353_23260at 5102.905 kb on + strand, within AO353_23260at 5102.905 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.907 kb on + strand, within AO353_23260at 5102.908 kb on - strand, within AO353_23260at 5102.908 kb on - strand, within AO353_23260at 5102.908 kb on - strandat 5102.908 kb on - strand, within AO353_23260at 5102.908 kb on - strand, within AO353_23260at 5102.908 kb on - strand, within AO353_23260at 5102.908 kb on - strand, within AO353_23260at 5102.908 kb on - strand, within AO353_23260at 5102.908 kb on - strand, within AO353_23260at 5102.908 kb on - strand, within AO353_23260at 5103.006 kb on + strand, within AO353_23260at 5103.006 kb on + strand, within AO353_23260at 5103.006 kb on + strand, within AO353_23260at 5103.006 kb on + strand, within AO353_23260at 5103.006 kb on + strand, within AO353_23260at 5103.007 kb on - strand, within AO353_23260at 5103.007 kb on - strand, within AO353_23260at 5103.007 kb on - strand, within AO353_23260at 5103.007 kb on - strand, within AO353_23260at 5103.007 kb on - strand, within AO353_23260at 5103.007 kb on - strand, within AO353_23260at 5103.007 kb on - strand, within AO353_23260at 5103.007 kb on - strand, within AO353_23260at 5103.051 kb on + strand, within AO353_23260at 5103.051 kb on + strand, within AO353_23260at 5103.051 kb on + strand, within AO353_23260at 5103.051 kb on + strand, within AO353_23260at 5103.051 kb on + strand, within AO353_23260at 5103.052 kb on - strand, within AO353_23260at 5103.052 kb on - strand, within AO353_23260at 5103.052 kb on - strand, within AO353_23260at 5103.052 kb on - strand, within AO353_23260at 5103.052 kb on - strand, within AO353_23260at 5103.247 kb on + strandat 5103.248 kb on - strandat 5103.413 kb on + strand, within AO353_23265at 5103.414 kb on - strand, within AO353_23265at 5103.414 kb on - strand, within AO353_23265at 5103.414 kb on - strand, within AO353_23265at 5103.806 kb on + strand, within AO353_23265at 5103.807 kb on - strand, within AO353_23265at 5103.830 kb on + strand, within AO353_23265at 5103.929 kb on + strand, within AO353_23265at 5103.930 kb on - strand, within AO353_23265at 5103.930 kb on - strand, within AO353_23265at 5103.930 kb on - strand, within AO353_23265at 5103.930 kb on - strand, within AO353_23265at 5103.995 kb on + strand, within AO353_23265at 5103.996 kb on - strand, within AO353_23265at 5103.996 kb on - strand, within AO353_23265at 5103.996 kb on - strand, within AO353_23265at 5104.076 kb on + strand, within AO353_23265at 5104.077 kb on - strand, within AO353_23265at 5104.077 kb on - strand, within AO353_23265at 5104.159 kb on + strandat 5104.172 kb on - strandat 5104.311 kb on - strandat 5104.311 kb on - strandat 5104.377 kb on + strandat 5104.377 kb on + strandat 5104.378 kb on - strandat 5104.451 kb on + strandat 5104.463 kb on + strandat 5104.464 kb on - strandat 5104.464 kb on - strandat 5104.888 kb on - strand, within AO353_23270at 5104.914 kb on + strand, within AO353_23270at 5104.943 kb on + strand, within AO353_23270at 5104.943 kb on + strand, within AO353_23270at 5104.943 kb on + strand, within AO353_23270at 5104.944 kb on - strand, within AO353_23270at 5104.944 kb on - strand, within AO353_23270at 5104.944 kb on - strand, within AO353_23270

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 34 mM
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5,102,274 + AO353_23260 0.28 -0.2
5,102,275 - AO353_23260 0.28 -0.2
5,102,275 - AO353_23260 0.28 +0.5
5,102,275 - AO353_23260 0.28 -0.2
5,102,275 - AO353_23260 0.28 -0.6
5,102,308 + AO353_23260 0.30 -1.1
5,102,379 + AO353_23260 0.36 +1.8
5,102,380 - AO353_23260 0.36 -1.2
5,102,406 + AO353_23260 0.38 -1.1
5,102,406 + AO353_23260 0.38 +1.3
5,102,407 - AO353_23260 0.38 -1.8
5,102,407 - AO353_23260 0.38 -0.6
5,102,407 - AO353_23260 0.38 -0.4
5,102,407 - AO353_23260 0.38 -1.1
5,102,407 - AO353_23260 0.38 -1.8
5,102,865 + AO353_23260 0.71 -0.2
5,102,866 - AO353_23260 0.71 +0.4
5,102,905 + AO353_23260 0.74 +0.9
5,102,905 + AO353_23260 0.74 -0.8
5,102,907 + AO353_23260 0.74 -0.2
5,102,907 + AO353_23260 0.74 -0.2
5,102,907 + AO353_23260 0.74 +0.8
5,102,907 + AO353_23260 0.74 +2.8
5,102,907 + AO353_23260 0.74 +0.6
5,102,907 + AO353_23260 0.74 +0.6
5,102,907 + AO353_23260 0.74 +0.2
5,102,907 + AO353_23260 0.74 -1.8
5,102,907 + AO353_23260 0.74 +0.2
5,102,907 + AO353_23260 0.74 -0.1
5,102,907 + AO353_23260 0.74 -0.5
5,102,907 + AO353_23260 0.74 +1.3
5,102,907 + AO353_23260 0.74 -0.6
5,102,907 + AO353_23260 0.74 +0.3
5,102,908 - AO353_23260 0.75 +0.9
5,102,908 - AO353_23260 0.75 -0.2
5,102,908 - +0.2
5,102,908 - AO353_23260 0.75 +0.8
5,102,908 - AO353_23260 0.75 +1.2
5,102,908 - AO353_23260 0.75 -0.2
5,102,908 - AO353_23260 0.75 +0.8
5,102,908 - AO353_23260 0.75 +1.8
5,102,908 - AO353_23260 0.75 +0.5
5,102,908 - AO353_23260 0.75 +1.2
5,103,006 + AO353_23260 0.82 +0.0
5,103,006 + AO353_23260 0.82 -0.0
5,103,006 + AO353_23260 0.82 +2.8
5,103,006 + AO353_23260 0.82 -0.9
5,103,006 + AO353_23260 0.82 +0.2
5,103,007 - AO353_23260 0.82 -0.2
5,103,007 - AO353_23260 0.82 +1.3
5,103,007 - AO353_23260 0.82 +2.0
5,103,007 - AO353_23260 0.82 +1.6
5,103,007 - AO353_23260 0.82 -0.2
5,103,007 - AO353_23260 0.82 +0.2
5,103,007 - AO353_23260 0.82 -1.1
5,103,007 - AO353_23260 0.82 -0.8
5,103,051 + AO353_23260 0.85 -1.0
5,103,051 + AO353_23260 0.85 +2.1
5,103,051 + AO353_23260 0.85 +0.3
5,103,051 + AO353_23260 0.85 +0.5
5,103,051 + AO353_23260 0.85 +1.2
5,103,052 - AO353_23260 0.85 -0.8
5,103,052 - AO353_23260 0.85 -0.8
5,103,052 - AO353_23260 0.85 -0.2
5,103,052 - AO353_23260 0.85 +0.3
5,103,052 - AO353_23260 0.85 +0.3
5,103,247 + +0.5
5,103,248 - +0.5
5,103,413 + AO353_23265 0.17 -0.6
5,103,414 - AO353_23265 0.17 -0.5
5,103,414 - AO353_23265 0.17 -1.6
5,103,414 - AO353_23265 0.17 -0.2
5,103,806 + AO353_23265 0.59 +1.0
5,103,807 - AO353_23265 0.59 +1.8
5,103,830 + AO353_23265 0.62 -2.6
5,103,929 + AO353_23265 0.72 +0.4
5,103,930 - AO353_23265 0.72 +0.8
5,103,930 - AO353_23265 0.72 -0.4
5,103,930 - AO353_23265 0.72 -0.1
5,103,930 - AO353_23265 0.72 -0.2
5,103,995 + AO353_23265 0.79 -1.8
5,103,996 - AO353_23265 0.79 -0.6
5,103,996 - AO353_23265 0.79 -1.3
5,103,996 - AO353_23265 0.79 +0.3
5,104,076 + AO353_23265 0.88 -0.4
5,104,077 - AO353_23265 0.88 -1.8
5,104,077 - AO353_23265 0.88 -1.2
5,104,159 + -0.2
5,104,172 - -0.1
5,104,311 - -0.6
5,104,311 - +0.2
5,104,377 + +0.9
5,104,377 + +1.2
5,104,378 - -1.2
5,104,451 + +1.7
5,104,463 + -0.5
5,104,464 - -0.8
5,104,464 - -0.2
5,104,888 - AO353_23270 0.39 -1.1
5,104,914 + AO353_23270 0.41 +1.8
5,104,943 + AO353_23270 0.44 +1.0
5,104,943 + AO353_23270 0.44 +0.2
5,104,943 + AO353_23270 0.44 -0.8
5,104,944 - AO353_23270 0.44 +0.5
5,104,944 - AO353_23270 0.44 +0.2
5,104,944 - AO353_23270 0.44 -0.2

Or see this region's nucleotide sequence