Experiment: acetate 34 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21635 and AO353_21640 overlap by 4 nucleotides AO353_21640 and AO353_21645 are separated by 11 nucleotides AO353_21645 and AO353_21650 are separated by 331 nucleotides AO353_21650 and AO353_21655 are separated by 306 nucleotides
AO353_21635: AO353_21635 - cobalamin biosynthesis protein CobE, at 4,744,199 to 4,744,612
_21635
AO353_21640: AO353_21640 - cobalt transporter, at 4,744,609 to 4,745,310
_21640
AO353_21645: AO353_21645 - cobalt transporter, at 4,745,322 to 4,745,513
_21645
AO353_21650: AO353_21650 - hypothetical protein, at 4,745,845 to 4,746,066
_21650
AO353_21655: AO353_21655 - cobalamin biosynthesis protein CobW, at 4,746,373 to 4,747,440
_21655
Position (kb) 4745
4746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4744.374 kb on + strand, within AO353_21635 at 4744.493 kb on + strand, within AO353_21635 at 4744.493 kb on + strand at 4744.493 kb on + strand, within AO353_21635 at 4744.494 kb on - strand, within AO353_21635 at 4744.494 kb on - strand, within AO353_21635 at 4745.073 kb on + strand, within AO353_21640 at 4745.198 kb on + strand, within AO353_21640 at 4745.298 kb on + strand at 4745.299 kb on - strand at 4745.299 kb on - strand at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.404 kb on + strand, within AO353_21645 at 4745.405 kb on - strand, within AO353_21645 at 4745.405 kb on - strand, within AO353_21645 at 4745.556 kb on + strand at 4745.556 kb on + strand at 4745.556 kb on + strand at 4745.556 kb on + strand at 4745.557 kb on - strand at 4745.557 kb on - strand at 4745.557 kb on - strand at 4745.557 kb on - strand at 4745.557 kb on - strand at 4745.557 kb on - strand at 4745.616 kb on + strand at 4745.617 kb on - strand at 4745.774 kb on + strand at 4745.774 kb on + strand at 4745.774 kb on + strand at 4745.825 kb on - strand at 4745.836 kb on + strand at 4745.836 kb on + strand at 4745.837 kb on - strand at 4745.837 kb on - strand at 4745.837 kb on - strand at 4745.963 kb on + strand, within AO353_21650 at 4745.964 kb on - strand, within AO353_21650 at 4746.106 kb on + strand at 4746.106 kb on + strand at 4746.106 kb on + strand at 4746.106 kb on + strand at 4746.106 kb on + strand at 4746.107 kb on - strand at 4746.107 kb on - strand at 4746.107 kb on - strand at 4746.107 kb on - strand at 4746.107 kb on - strand at 4746.107 kb on - strand at 4746.275 kb on + strand at 4746.275 kb on + strand at 4746.276 kb on - strand at 4746.276 kb on - strand at 4746.276 kb on - strand at 4746.343 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 34 mM remove 4,744,374 + AO353_21635 0.42 -0.8 4,744,493 + AO353_21635 0.71 -0.6 4,744,493 + -0.5 4,744,493 + AO353_21635 0.71 -0.6 4,744,494 - AO353_21635 0.71 -0.6 4,744,494 - AO353_21635 0.71 -1.5 4,745,073 + AO353_21640 0.66 +0.6 4,745,198 + AO353_21640 0.84 +0.5 4,745,298 + +0.2 4,745,299 - +0.1 4,745,299 - +0.8 4,745,404 + AO353_21645 0.43 -0.7 4,745,404 + AO353_21645 0.43 +1.8 4,745,404 + AO353_21645 0.43 -2.5 4,745,404 + AO353_21645 0.43 +0.2 4,745,404 + AO353_21645 0.43 -1.2 4,745,404 + AO353_21645 0.43 -1.2 4,745,404 + AO353_21645 0.43 -1.2 4,745,405 - AO353_21645 0.43 +1.4 4,745,405 - AO353_21645 0.43 +2.4 4,745,556 + -0.2 4,745,556 + +0.2 4,745,556 + +0.1 4,745,556 + +0.7 4,745,557 - -1.2 4,745,557 - +0.1 4,745,557 - -0.8 4,745,557 - -0.7 4,745,557 - +0.2 4,745,557 - -0.3 4,745,616 + +0.4 4,745,617 - -0.8 4,745,774 + -0.2 4,745,774 + -0.4 4,745,774 + -0.4 4,745,825 - +1.7 4,745,836 + +0.4 4,745,836 + -0.7 4,745,837 - -0.7 4,745,837 - +1.2 4,745,837 - -0.3 4,745,963 + AO353_21650 0.53 -0.2 4,745,964 - AO353_21650 0.54 +2.4 4,746,106 + -0.8 4,746,106 + +0.5 4,746,106 + -3.0 4,746,106 + +0.8 4,746,106 + +0.9 4,746,107 - +0.8 4,746,107 - -1.3 4,746,107 - +0.8 4,746,107 - -1.5 4,746,107 - +0.2 4,746,107 - +0.3 4,746,275 + +0.8 4,746,275 + +1.1 4,746,276 - -1.4 4,746,276 - +0.3 4,746,276 - +0.4 4,746,343 + -0.5
Or see this region's nucleotide sequence