Experiment: acetate 34 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05015 and AO353_05020 are separated by 315 nucleotides AO353_05020 and AO353_05025 are separated by 219 nucleotides
AO353_05015: AO353_05015 - thioredoxin reductase, at 1,104,239 to 1,105,201
_05015
AO353_05020: AO353_05020 - cysteine biosynthesis protein CysZ, at 1,105,517 to 1,106,272
_05020
AO353_05025: AO353_05025 - hypothetical protein, at 1,106,492 to 1,109,593
_05025
Position (kb)
1105
1106
1107 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1104.892 kb on - strand, within AO353_05015 at 1105.227 kb on - strand at 1105.230 kb on - strand at 1105.230 kb on - strand at 1105.230 kb on - strand at 1105.230 kb on - strand at 1105.230 kb on - strand at 1105.301 kb on - strand at 1105.384 kb on - strand at 1105.413 kb on + strand at 1105.413 kb on + strand at 1105.413 kb on + strand at 1105.414 kb on - strand at 1105.428 kb on + strand at 1105.429 kb on - strand at 1105.434 kb on + strand at 1105.434 kb on + strand at 1105.434 kb on + strand at 1105.435 kb on - strand at 1105.435 kb on - strand at 1105.435 kb on - strand at 1105.435 kb on - strand at 1105.435 kb on - strand at 1105.435 kb on - strand at 1105.516 kb on + strand at 1105.547 kb on + strand at 1105.547 kb on + strand at 1105.547 kb on + strand at 1105.548 kb on - strand at 1105.548 kb on - strand at 1105.548 kb on - strand at 1105.548 kb on - strand at 1105.646 kb on + strand, within AO353_05020 at 1105.647 kb on - strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.724 kb on + strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.725 kb on - strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.728 kb on + strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.729 kb on - strand, within AO353_05020 at 1105.940 kb on + strand, within AO353_05020 at 1105.941 kb on - strand, within AO353_05020 at 1106.014 kb on - strand, within AO353_05020 at 1106.014 kb on - strand, within AO353_05020 at 1106.051 kb on + strand, within AO353_05020 at 1106.051 kb on + strand, within AO353_05020 at 1106.051 kb on + strand, within AO353_05020 at 1106.052 kb on - strand, within AO353_05020 at 1106.052 kb on - strand, within AO353_05020 at 1106.153 kb on + strand, within AO353_05020 at 1106.154 kb on - strand, within AO353_05020 at 1106.154 kb on - strand, within AO353_05020 at 1106.154 kb on - strand, within AO353_05020 at 1106.332 kb on - strand at 1106.332 kb on - strand at 1106.332 kb on - strand at 1106.457 kb on + strand at 1106.457 kb on + strand at 1106.457 kb on + strand at 1106.457 kb on + strand at 1106.457 kb on + strand at 1106.457 kb on + strand at 1106.458 kb on - strand at 1106.489 kb on + strand at 1106.489 kb on + strand at 1106.489 kb on + strand at 1106.490 kb on - strand at 1106.490 kb on - strand at 1106.490 kb on - strand at 1106.493 kb on + strand at 1106.493 kb on + strand at 1106.493 kb on + strand at 1106.493 kb on + strand at 1106.493 kb on + strand at 1106.494 kb on - strand at 1106.494 kb on - strand at 1106.494 kb on - strand at 1106.502 kb on + strand at 1106.502 kb on + strand at 1106.502 kb on + strand at 1106.502 kb on + strand at 1106.502 kb on + strand at 1106.502 kb on + strand at 1106.502 kb on + strand at 1106.502 kb on + strand at 1106.502 kb on + strand at 1106.502 kb on + strand at 1106.503 kb on - strand at 1106.503 kb on - strand at 1106.503 kb on - strand at 1106.503 kb on - strand at 1106.503 kb on - strand at 1106.503 kb on - strand at 1106.503 kb on - strand at 1106.503 kb on - strand at 1106.510 kb on - strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.556 kb on + strand at 1106.557 kb on - strand at 1106.557 kb on - strand at 1106.557 kb on - strand at 1106.557 kb on - strand at 1106.557 kb on - strand at 1106.557 kb on - strand at 1106.557 kb on - strand at 1106.557 kb on - strand at 1106.557 kb on - strand at 1106.591 kb on - strand at 1106.591 kb on - strand at 1106.668 kb on + strand at 1106.668 kb on + strand at 1106.668 kb on + strand at 1106.668 kb on + strand at 1106.668 kb on + strand at 1106.668 kb on + strand at 1106.668 kb on + strand at 1106.669 kb on - strand at 1106.669 kb on - strand at 1106.669 kb on - strand at 1106.718 kb on + strand at 1106.719 kb on - strand at 1106.719 kb on - strand at 1106.719 kb on - strand at 1106.719 kb on - strand at 1106.742 kb on + strand at 1106.742 kb on + strand at 1106.742 kb on + strand at 1106.742 kb on + strand at 1106.743 kb on - strand at 1106.743 kb on - strand at 1106.743 kb on - strand at 1106.743 kb on - strand at 1106.743 kb on - strand at 1106.743 kb on - strand at 1106.743 kb on - strand at 1106.743 kb on - strand at 1106.743 kb on - strand at 1106.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 34 mM remove 1,104,892 - AO353_05015 0.68 -0.2 1,105,227 - +0.4 1,105,230 - -2.2 1,105,230 - -0.4 1,105,230 - -0.4 1,105,230 - -0.7 1,105,230 - -0.3 1,105,301 - +0.5 1,105,384 - +1.4 1,105,413 + +0.1 1,105,413 + +0.2 1,105,413 + +0.8 1,105,414 - +0.3 1,105,428 + -2.4 1,105,429 - +1.0 1,105,434 + +1.7 1,105,434 + +0.6 1,105,434 + -0.3 1,105,435 - -0.9 1,105,435 - -0.9 1,105,435 - +1.5 1,105,435 - -1.7 1,105,435 - -0.2 1,105,435 - +1.5 1,105,516 + +0.1 1,105,547 + -0.9 1,105,547 + -0.5 1,105,547 + -1.5 1,105,548 - -0.9 1,105,548 - +0.5 1,105,548 - -1.6 1,105,548 - +1.1 1,105,646 + AO353_05020 0.17 +0.5 1,105,647 - AO353_05020 0.17 +1.6 1,105,724 + AO353_05020 0.27 -1.1 1,105,724 + AO353_05020 0.27 +0.2 1,105,724 + AO353_05020 0.27 +0.5 1,105,724 + AO353_05020 0.27 +0.4 1,105,724 + AO353_05020 0.27 +0.5 1,105,724 + AO353_05020 0.27 +1.5 1,105,724 + AO353_05020 0.27 -1.5 1,105,724 + AO353_05020 0.27 +0.1 1,105,724 + AO353_05020 0.27 -0.3 1,105,724 + AO353_05020 0.27 -0.1 1,105,724 + AO353_05020 0.27 -0.6 1,105,724 + AO353_05020 0.27 -0.1 1,105,724 + AO353_05020 0.27 -0.7 1,105,725 - AO353_05020 0.28 +0.8 1,105,725 - AO353_05020 0.28 +0.6 1,105,725 - AO353_05020 0.28 -0.6 1,105,725 - AO353_05020 0.28 -1.2 1,105,725 - AO353_05020 0.28 -1.5 1,105,725 - AO353_05020 0.28 +1.5 1,105,725 - AO353_05020 0.28 -0.4 1,105,725 - AO353_05020 0.28 +0.7 1,105,725 - AO353_05020 0.28 -0.4 1,105,725 - AO353_05020 0.28 -0.5 1,105,725 - AO353_05020 0.28 +0.4 1,105,725 - AO353_05020 0.28 -1.4 1,105,725 - AO353_05020 0.28 +0.9 1,105,728 + AO353_05020 0.28 -1.7 1,105,728 + AO353_05020 0.28 +1.4 1,105,728 + AO353_05020 0.28 -0.4 1,105,728 + AO353_05020 0.28 -1.2 1,105,728 + AO353_05020 0.28 +1.1 1,105,728 + AO353_05020 0.28 -1.5 1,105,728 + AO353_05020 0.28 -1.9 1,105,728 + AO353_05020 0.28 -1.2 1,105,728 + AO353_05020 0.28 -0.4 1,105,728 + AO353_05020 0.28 +0.5 1,105,728 + AO353_05020 0.28 -1.1 1,105,729 - AO353_05020 0.28 +0.1 1,105,729 - AO353_05020 0.28 -0.3 1,105,729 - AO353_05020 0.28 +0.1 1,105,729 - AO353_05020 0.28 +1.7 1,105,729 - AO353_05020 0.28 +0.7 1,105,729 - AO353_05020 0.28 +0.8 1,105,729 - AO353_05020 0.28 -0.5 1,105,729 - AO353_05020 0.28 +0.3 1,105,729 - AO353_05020 0.28 -0.5 1,105,729 - AO353_05020 0.28 -0.9 1,105,940 + AO353_05020 0.56 +0.9 1,105,941 - AO353_05020 0.56 +1.5 1,106,014 - AO353_05020 0.66 -0.7 1,106,014 - AO353_05020 0.66 -0.3 1,106,051 + AO353_05020 0.71 -0.8 1,106,051 + AO353_05020 0.71 -0.9 1,106,051 + AO353_05020 0.71 +0.1 1,106,052 - AO353_05020 0.71 +0.4 1,106,052 - AO353_05020 0.71 -0.3 1,106,153 + AO353_05020 0.84 +0.8 1,106,154 - AO353_05020 0.84 -1.2 1,106,154 - AO353_05020 0.84 +1.1 1,106,154 - AO353_05020 0.84 -1.0 1,106,332 - -1.1 1,106,332 - +0.4 1,106,332 - -0.2 1,106,457 + -0.5 1,106,457 + +2.4 1,106,457 + -0.4 1,106,457 + -1.7 1,106,457 + -0.9 1,106,457 + +0.2 1,106,458 - -0.7 1,106,489 + -0.2 1,106,489 + +2.1 1,106,489 + -0.9 1,106,490 - -0.6 1,106,490 - +0.4 1,106,490 - +0.7 1,106,493 + -0.2 1,106,493 + +1.0 1,106,493 + -0.5 1,106,493 + -1.1 1,106,493 + -0.6 1,106,494 - +0.4 1,106,494 - -0.5 1,106,494 - -0.6 1,106,502 + +0.1 1,106,502 + -0.1 1,106,502 + -0.5 1,106,502 + -0.9 1,106,502 + +0.8 1,106,502 + +2.1 1,106,502 + -1.1 1,106,502 + +1.1 1,106,502 + +0.9 1,106,502 + +1.3 1,106,503 - -1.2 1,106,503 - -2.5 1,106,503 - -0.9 1,106,503 - -0.0 1,106,503 - +0.3 1,106,503 - +0.4 1,106,503 - +1.5 1,106,503 - +0.4 1,106,510 - +1.1 1,106,556 + +0.1 1,106,556 + -0.3 1,106,556 + +0.2 1,106,556 + -0.7 1,106,556 + +0.6 1,106,556 + -0.6 1,106,556 + +0.9 1,106,556 + -0.5 1,106,556 + +0.1 1,106,556 + +0.1 1,106,556 + -0.5 1,106,557 - -0.1 1,106,557 - -0.7 1,106,557 - +1.4 1,106,557 - -0.4 1,106,557 - +0.4 1,106,557 - -0.1 1,106,557 - +2.1 1,106,557 - +1.0 1,106,557 - +0.1 1,106,591 - +0.1 1,106,591 - -1.0 1,106,668 + -1.2 1,106,668 + +0.5 1,106,668 + -0.8 1,106,668 + -0.1 1,106,668 + +0.8 1,106,668 + +1.5 1,106,668 + -0.5 1,106,669 - -0.5 1,106,669 - -0.6 1,106,669 - -1.0 1,106,718 + -2.6 1,106,719 - +0.2 1,106,719 - +1.9 1,106,719 - +0.4 1,106,719 - -0.7 1,106,742 + -0.5 1,106,742 + -0.5 1,106,742 + +1.1 1,106,742 + +1.1 1,106,743 - +0.7 1,106,743 - +0.3 1,106,743 - +1.4 1,106,743 - +0.1 1,106,743 - +0.1 1,106,743 - -2.7 1,106,743 - +1.1 1,106,743 - -0.9 1,106,743 - -1.9 1,106,743 - +1.1
Or see this region's nucleotide sequence