Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05020

Experiment: acetate 34 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05015 and AO353_05020 are separated by 315 nucleotidesAO353_05020 and AO353_05025 are separated by 219 nucleotides AO353_05015: AO353_05015 - thioredoxin reductase, at 1,104,239 to 1,105,201 _05015 AO353_05020: AO353_05020 - cysteine biosynthesis protein CysZ, at 1,105,517 to 1,106,272 _05020 AO353_05025: AO353_05025 - hypothetical protein, at 1,106,492 to 1,109,593 _05025 Position (kb) 1105 1106 1107Strain fitness (log2 ratio) -2 -1 0 1 2at 1104.892 kb on - strand, within AO353_05015at 1105.227 kb on - strandat 1105.230 kb on - strandat 1105.230 kb on - strandat 1105.230 kb on - strandat 1105.230 kb on - strandat 1105.230 kb on - strandat 1105.301 kb on - strandat 1105.384 kb on - strandat 1105.413 kb on + strandat 1105.413 kb on + strandat 1105.413 kb on + strandat 1105.414 kb on - strandat 1105.428 kb on + strandat 1105.429 kb on - strandat 1105.434 kb on + strandat 1105.434 kb on + strandat 1105.434 kb on + strandat 1105.435 kb on - strandat 1105.435 kb on - strandat 1105.435 kb on - strandat 1105.435 kb on - strandat 1105.435 kb on - strandat 1105.435 kb on - strandat 1105.516 kb on + strandat 1105.547 kb on + strandat 1105.547 kb on + strandat 1105.547 kb on + strandat 1105.548 kb on - strandat 1105.548 kb on - strandat 1105.548 kb on - strandat 1105.548 kb on - strandat 1105.646 kb on + strand, within AO353_05020at 1105.647 kb on - strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.724 kb on + strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.725 kb on - strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.728 kb on + strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.729 kb on - strand, within AO353_05020at 1105.940 kb on + strand, within AO353_05020at 1105.941 kb on - strand, within AO353_05020at 1106.014 kb on - strand, within AO353_05020at 1106.014 kb on - strand, within AO353_05020at 1106.051 kb on + strand, within AO353_05020at 1106.051 kb on + strand, within AO353_05020at 1106.051 kb on + strand, within AO353_05020at 1106.052 kb on - strand, within AO353_05020at 1106.052 kb on - strand, within AO353_05020at 1106.153 kb on + strand, within AO353_05020at 1106.154 kb on - strand, within AO353_05020at 1106.154 kb on - strand, within AO353_05020at 1106.154 kb on - strand, within AO353_05020at 1106.332 kb on - strandat 1106.332 kb on - strandat 1106.332 kb on - strandat 1106.457 kb on + strandat 1106.457 kb on + strandat 1106.457 kb on + strandat 1106.457 kb on + strandat 1106.457 kb on + strandat 1106.457 kb on + strandat 1106.458 kb on - strandat 1106.489 kb on + strandat 1106.489 kb on + strandat 1106.489 kb on + strandat 1106.490 kb on - strandat 1106.490 kb on - strandat 1106.490 kb on - strandat 1106.493 kb on + strandat 1106.493 kb on + strandat 1106.493 kb on + strandat 1106.493 kb on + strandat 1106.493 kb on + strandat 1106.494 kb on - strandat 1106.494 kb on - strandat 1106.494 kb on - strandat 1106.502 kb on + strandat 1106.502 kb on + strandat 1106.502 kb on + strandat 1106.502 kb on + strandat 1106.502 kb on + strandat 1106.502 kb on + strandat 1106.502 kb on + strandat 1106.502 kb on + strandat 1106.502 kb on + strandat 1106.502 kb on + strandat 1106.503 kb on - strandat 1106.503 kb on - strandat 1106.503 kb on - strandat 1106.503 kb on - strandat 1106.503 kb on - strandat 1106.503 kb on - strandat 1106.503 kb on - strandat 1106.503 kb on - strandat 1106.510 kb on - strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.556 kb on + strandat 1106.557 kb on - strandat 1106.557 kb on - strandat 1106.557 kb on - strandat 1106.557 kb on - strandat 1106.557 kb on - strandat 1106.557 kb on - strandat 1106.557 kb on - strandat 1106.557 kb on - strandat 1106.557 kb on - strandat 1106.591 kb on - strandat 1106.591 kb on - strandat 1106.668 kb on + strandat 1106.668 kb on + strandat 1106.668 kb on + strandat 1106.668 kb on + strandat 1106.668 kb on + strandat 1106.668 kb on + strandat 1106.668 kb on + strandat 1106.669 kb on - strandat 1106.669 kb on - strandat 1106.669 kb on - strandat 1106.718 kb on + strandat 1106.719 kb on - strandat 1106.719 kb on - strandat 1106.719 kb on - strandat 1106.719 kb on - strandat 1106.742 kb on + strandat 1106.742 kb on + strandat 1106.742 kb on + strandat 1106.742 kb on + strandat 1106.743 kb on - strandat 1106.743 kb on - strandat 1106.743 kb on - strandat 1106.743 kb on - strandat 1106.743 kb on - strandat 1106.743 kb on - strandat 1106.743 kb on - strandat 1106.743 kb on - strandat 1106.743 kb on - strandat 1106.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 34 mM
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1,104,892 - AO353_05015 0.68 -0.2
1,105,227 - +0.4
1,105,230 - -2.2
1,105,230 - -0.4
1,105,230 - -0.4
1,105,230 - -0.7
1,105,230 - -0.3
1,105,301 - +0.5
1,105,384 - +1.4
1,105,413 + +0.1
1,105,413 + +0.2
1,105,413 + +0.8
1,105,414 - +0.3
1,105,428 + -2.4
1,105,429 - +1.0
1,105,434 + +1.7
1,105,434 + +0.6
1,105,434 + -0.3
1,105,435 - -0.9
1,105,435 - -0.9
1,105,435 - +1.5
1,105,435 - -1.7
1,105,435 - -0.2
1,105,435 - +1.5
1,105,516 + +0.1
1,105,547 + -0.9
1,105,547 + -0.5
1,105,547 + -1.5
1,105,548 - -0.9
1,105,548 - +0.5
1,105,548 - -1.6
1,105,548 - +1.1
1,105,646 + AO353_05020 0.17 +0.5
1,105,647 - AO353_05020 0.17 +1.6
1,105,724 + AO353_05020 0.27 -1.1
1,105,724 + AO353_05020 0.27 +0.2
1,105,724 + AO353_05020 0.27 +0.5
1,105,724 + AO353_05020 0.27 +0.4
1,105,724 + AO353_05020 0.27 +0.5
1,105,724 + AO353_05020 0.27 +1.5
1,105,724 + AO353_05020 0.27 -1.5
1,105,724 + AO353_05020 0.27 +0.1
1,105,724 + AO353_05020 0.27 -0.3
1,105,724 + AO353_05020 0.27 -0.1
1,105,724 + AO353_05020 0.27 -0.6
1,105,724 + AO353_05020 0.27 -0.1
1,105,724 + AO353_05020 0.27 -0.7
1,105,725 - AO353_05020 0.28 +0.8
1,105,725 - AO353_05020 0.28 +0.6
1,105,725 - AO353_05020 0.28 -0.6
1,105,725 - AO353_05020 0.28 -1.2
1,105,725 - AO353_05020 0.28 -1.5
1,105,725 - AO353_05020 0.28 +1.5
1,105,725 - AO353_05020 0.28 -0.4
1,105,725 - AO353_05020 0.28 +0.7
1,105,725 - AO353_05020 0.28 -0.4
1,105,725 - AO353_05020 0.28 -0.5
1,105,725 - AO353_05020 0.28 +0.4
1,105,725 - AO353_05020 0.28 -1.4
1,105,725 - AO353_05020 0.28 +0.9
1,105,728 + AO353_05020 0.28 -1.7
1,105,728 + AO353_05020 0.28 +1.4
1,105,728 + AO353_05020 0.28 -0.4
1,105,728 + AO353_05020 0.28 -1.2
1,105,728 + AO353_05020 0.28 +1.1
1,105,728 + AO353_05020 0.28 -1.5
1,105,728 + AO353_05020 0.28 -1.9
1,105,728 + AO353_05020 0.28 -1.2
1,105,728 + AO353_05020 0.28 -0.4
1,105,728 + AO353_05020 0.28 +0.5
1,105,728 + AO353_05020 0.28 -1.1
1,105,729 - AO353_05020 0.28 +0.1
1,105,729 - AO353_05020 0.28 -0.3
1,105,729 - AO353_05020 0.28 +0.1
1,105,729 - AO353_05020 0.28 +1.7
1,105,729 - AO353_05020 0.28 +0.7
1,105,729 - AO353_05020 0.28 +0.8
1,105,729 - AO353_05020 0.28 -0.5
1,105,729 - AO353_05020 0.28 +0.3
1,105,729 - AO353_05020 0.28 -0.5
1,105,729 - AO353_05020 0.28 -0.9
1,105,940 + AO353_05020 0.56 +0.9
1,105,941 - AO353_05020 0.56 +1.5
1,106,014 - AO353_05020 0.66 -0.7
1,106,014 - AO353_05020 0.66 -0.3
1,106,051 + AO353_05020 0.71 -0.8
1,106,051 + AO353_05020 0.71 -0.9
1,106,051 + AO353_05020 0.71 +0.1
1,106,052 - AO353_05020 0.71 +0.4
1,106,052 - AO353_05020 0.71 -0.3
1,106,153 + AO353_05020 0.84 +0.8
1,106,154 - AO353_05020 0.84 -1.2
1,106,154 - AO353_05020 0.84 +1.1
1,106,154 - AO353_05020 0.84 -1.0
1,106,332 - -1.1
1,106,332 - +0.4
1,106,332 - -0.2
1,106,457 + -0.5
1,106,457 + +2.4
1,106,457 + -0.4
1,106,457 + -1.7
1,106,457 + -0.9
1,106,457 + +0.2
1,106,458 - -0.7
1,106,489 + -0.2
1,106,489 + +2.1
1,106,489 + -0.9
1,106,490 - -0.6
1,106,490 - +0.4
1,106,490 - +0.7
1,106,493 + -0.2
1,106,493 + +1.0
1,106,493 + -0.5
1,106,493 + -1.1
1,106,493 + -0.6
1,106,494 - +0.4
1,106,494 - -0.5
1,106,494 - -0.6
1,106,502 + +0.1
1,106,502 + -0.1
1,106,502 + -0.5
1,106,502 + -0.9
1,106,502 + +0.8
1,106,502 + +2.1
1,106,502 + -1.1
1,106,502 + +1.1
1,106,502 + +0.9
1,106,502 + +1.3
1,106,503 - -1.2
1,106,503 - -2.5
1,106,503 - -0.9
1,106,503 - -0.0
1,106,503 - +0.3
1,106,503 - +0.4
1,106,503 - +1.5
1,106,503 - +0.4
1,106,510 - +1.1
1,106,556 + +0.1
1,106,556 + -0.3
1,106,556 + +0.2
1,106,556 + -0.7
1,106,556 + +0.6
1,106,556 + -0.6
1,106,556 + +0.9
1,106,556 + -0.5
1,106,556 + +0.1
1,106,556 + +0.1
1,106,556 + -0.5
1,106,557 - -0.1
1,106,557 - -0.7
1,106,557 - +1.4
1,106,557 - -0.4
1,106,557 - +0.4
1,106,557 - -0.1
1,106,557 - +2.1
1,106,557 - +1.0
1,106,557 - +0.1
1,106,591 - +0.1
1,106,591 - -1.0
1,106,668 + -1.2
1,106,668 + +0.5
1,106,668 + -0.8
1,106,668 + -0.1
1,106,668 + +0.8
1,106,668 + +1.5
1,106,668 + -0.5
1,106,669 - -0.5
1,106,669 - -0.6
1,106,669 - -1.0
1,106,718 + -2.6
1,106,719 - +0.2
1,106,719 - +1.9
1,106,719 - +0.4
1,106,719 - -0.7
1,106,742 + -0.5
1,106,742 + -0.5
1,106,742 + +1.1
1,106,742 + +1.1
1,106,743 - +0.7
1,106,743 - +0.3
1,106,743 - +1.4
1,106,743 - +0.1
1,106,743 - +0.1
1,106,743 - -2.7
1,106,743 - +1.1
1,106,743 - -0.9
1,106,743 - -1.9
1,106,743 - +1.1

Or see this region's nucleotide sequence