Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03840

Experiment: acetate 34 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03835 and AO353_03840 are separated by 136 nucleotidesAO353_03840 and AO353_03845 are separated by 18 nucleotidesAO353_03845 and AO353_03850 overlap by 4 nucleotides AO353_03835: AO353_03835 - AraC family transcriptional regulator, at 819,319 to 820,248 _03835 AO353_03840: AO353_03840 - ABC transporter ATP-binding protein, at 820,385 to 821,440 _03840 AO353_03845: AO353_03845 - ABC transporter permease, at 821,459 to 822,307 _03845 AO353_03850: AO353_03850 - ABC transporter permease, at 822,304 to 823,212 _03850 Position (kb) 820 821 822Strain fitness (log2 ratio) -2 -1 0 1 2 3at 819.405 kb on + strandat 819.406 kb on - strandat 819.406 kb on - strandat 819.562 kb on + strand, within AO353_03835at 819.562 kb on + strand, within AO353_03835at 819.562 kb on + strand, within AO353_03835at 819.562 kb on + strand, within AO353_03835at 819.563 kb on - strand, within AO353_03835at 819.563 kb on - strand, within AO353_03835at 819.563 kb on - strand, within AO353_03835at 819.577 kb on + strand, within AO353_03835at 819.577 kb on + strand, within AO353_03835at 819.577 kb on + strand, within AO353_03835at 819.577 kb on + strand, within AO353_03835at 819.578 kb on - strand, within AO353_03835at 819.578 kb on - strand, within AO353_03835at 819.578 kb on - strand, within AO353_03835at 819.578 kb on - strand, within AO353_03835at 819.636 kb on + strand, within AO353_03835at 819.637 kb on - strand, within AO353_03835at 819.745 kb on + strand, within AO353_03835at 819.745 kb on + strand, within AO353_03835at 819.745 kb on + strand, within AO353_03835at 819.745 kb on + strand, within AO353_03835at 819.746 kb on - strand, within AO353_03835at 819.746 kb on - strand, within AO353_03835at 819.746 kb on - strand, within AO353_03835at 819.746 kb on - strand, within AO353_03835at 819.746 kb on - strand, within AO353_03835at 819.746 kb on - strand, within AO353_03835at 819.746 kb on - strand, within AO353_03835at 819.746 kb on - strand, within AO353_03835at 819.895 kb on + strand, within AO353_03835at 819.895 kb on + strand, within AO353_03835at 819.895 kb on + strand, within AO353_03835at 819.896 kb on - strand, within AO353_03835at 819.896 kb on - strand, within AO353_03835at 819.960 kb on + strand, within AO353_03835at 819.964 kb on + strand, within AO353_03835at 819.964 kb on + strand, within AO353_03835at 819.964 kb on + strand, within AO353_03835at 819.964 kb on + strand, within AO353_03835at 819.964 kb on + strand, within AO353_03835at 819.964 kb on + strand, within AO353_03835at 819.964 kb on + strandat 819.964 kb on - strand, within AO353_03835at 819.965 kb on - strand, within AO353_03835at 819.965 kb on - strand, within AO353_03835at 819.965 kb on - strand, within AO353_03835at 819.965 kb on - strand, within AO353_03835at 819.965 kb on - strand, within AO353_03835at 820.069 kb on + strand, within AO353_03835at 820.070 kb on - strand, within AO353_03835at 820.156 kb on + strandat 820.157 kb on - strandat 820.187 kb on - strandat 820.187 kb on - strandat 820.247 kb on - strandat 820.247 kb on - strandat 820.742 kb on - strand, within AO353_03840at 820.742 kb on - strand, within AO353_03840at 820.776 kb on + strand, within AO353_03840at 820.776 kb on + strand, within AO353_03840at 820.777 kb on - strand, within AO353_03840at 821.345 kb on + strandat 821.345 kb on + strandat 821.346 kb on - strandat 821.346 kb on - strandat 821.440 kb on + strandat 821.440 kb on + strandat 821.440 kb on + strandat 821.440 kb on + strandat 821.440 kb on + strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.441 kb on - strandat 821.443 kb on + strandat 821.443 kb on + strandat 821.443 kb on + strandat 821.443 kb on + strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.444 kb on - strandat 821.447 kb on + strandat 821.447 kb on + strandat 821.447 kb on + strandat 821.447 kb on + strandat 821.447 kb on + strandat 821.448 kb on - strandat 821.448 kb on - strandat 821.448 kb on - strandat 821.549 kb on + strand, within AO353_03845at 821.549 kb on + strand, within AO353_03845at 821.550 kb on - strand, within AO353_03845at 821.550 kb on - strand, within AO353_03845at 821.593 kb on + strand, within AO353_03845at 821.593 kb on + strand, within AO353_03845at 821.594 kb on - strand, within AO353_03845at 821.619 kb on + strand, within AO353_03845at 821.619 kb on + strand, within AO353_03845at 821.620 kb on - strand, within AO353_03845at 821.620 kb on - strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.628 kb on + strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.629 kb on - strand, within AO353_03845at 821.909 kb on + strand, within AO353_03845at 821.910 kb on - strand, within AO353_03845at 821.991 kb on + strand, within AO353_03845at 821.991 kb on + strand, within AO353_03845at 821.991 kb on + strand, within AO353_03845at 821.992 kb on - strand, within AO353_03845at 821.992 kb on - strand, within AO353_03845at 821.992 kb on - strand, within AO353_03845at 821.992 kb on - strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.126 kb on + strand, within AO353_03845at 822.127 kb on - strand, within AO353_03845at 822.127 kb on - strand, within AO353_03845at 822.127 kb on - strand, within AO353_03845at 822.127 kb on - strand, within AO353_03845at 822.141 kb on + strand, within AO353_03845at 822.142 kb on - strand, within AO353_03845at 822.347 kb on + strandat 822.347 kb on + strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.348 kb on - strandat 822.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 34 mM
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819,405 + +0.7
819,406 - -1.2
819,406 - +0.3
819,562 + AO353_03835 0.26 +0.6
819,562 + AO353_03835 0.26 -0.8
819,562 + AO353_03835 0.26 -0.5
819,562 + AO353_03835 0.26 +0.0
819,563 - AO353_03835 0.26 +0.6
819,563 - AO353_03835 0.26 -0.5
819,563 - AO353_03835 0.26 +0.8
819,577 + AO353_03835 0.28 +3.2
819,577 + AO353_03835 0.28 +0.3
819,577 + AO353_03835 0.28 +0.6
819,577 + AO353_03835 0.28 +0.2
819,578 - AO353_03835 0.28 -2.1
819,578 - AO353_03835 0.28 -1.3
819,578 - AO353_03835 0.28 +2.0
819,578 - AO353_03835 0.28 -0.8
819,636 + AO353_03835 0.34 -0.5
819,637 - AO353_03835 0.34 +0.5
819,745 + AO353_03835 0.46 -0.0
819,745 + AO353_03835 0.46 +0.0
819,745 + AO353_03835 0.46 +1.0
819,745 + AO353_03835 0.46 +0.6
819,746 - AO353_03835 0.46 -1.4
819,746 - AO353_03835 0.46 +0.2
819,746 - AO353_03835 0.46 -1.0
819,746 - AO353_03835 0.46 -0.1
819,746 - AO353_03835 0.46 +0.7
819,746 - AO353_03835 0.46 +0.3
819,746 - AO353_03835 0.46 +0.5
819,746 - AO353_03835 0.46 -0.5
819,895 + AO353_03835 0.62 +0.2
819,895 + AO353_03835 0.62 +0.0
819,895 + AO353_03835 0.62 -1.3
819,896 - AO353_03835 0.62 +1.0
819,896 - AO353_03835 0.62 +0.0
819,960 + AO353_03835 0.69 -0.2
819,964 + AO353_03835 0.69 +0.4
819,964 + AO353_03835 0.69 +0.0
819,964 + AO353_03835 0.69 -0.9
819,964 + AO353_03835 0.69 +0.6
819,964 + AO353_03835 0.69 -1.0
819,964 + AO353_03835 0.69 +1.0
819,964 + +2.0
819,964 - AO353_03835 0.69 -1.5
819,965 - AO353_03835 0.69 -0.7
819,965 - AO353_03835 0.69 +0.3
819,965 - AO353_03835 0.69 +0.9
819,965 - AO353_03835 0.69 -1.0
819,965 - AO353_03835 0.69 +3.6
820,069 + AO353_03835 0.81 +0.0
820,070 - AO353_03835 0.81 +0.8
820,156 + +1.6
820,157 - -0.4
820,187 - +0.0
820,187 - +1.0
820,247 - -1.3
820,247 - -1.8
820,742 - AO353_03840 0.34 -0.4
820,742 - AO353_03840 0.34 +0.9
820,776 + AO353_03840 0.37 -1.3
820,776 + AO353_03840 0.37 -1.0
820,777 - AO353_03840 0.37 -1.3
821,345 + -0.3
821,345 + -1.2
821,346 - +0.3
821,346 - +1.3
821,440 + +1.8
821,440 + +0.0
821,440 + -0.4
821,440 + +1.5
821,440 + -0.2
821,441 - +0.7
821,441 - +0.3
821,441 - -0.4
821,441 - +0.5
821,441 - +1.0
821,441 - +0.6
821,443 + +0.6
821,443 + -1.0
821,443 + -0.5
821,443 + -0.1
821,444 - -0.5
821,444 - -1.3
821,444 - +0.9
821,444 - +0.3
821,444 - +0.0
821,444 - +0.0
821,444 - +0.6
821,444 - +0.3
821,444 - -0.7
821,444 - +0.3
821,444 - -0.3
821,447 + +0.2
821,447 + -1.5
821,447 + -1.5
821,447 + -0.2
821,447 + +1.0
821,448 - +0.0
821,448 - +0.0
821,448 - -1.3
821,549 + AO353_03845 0.11 +0.0
821,549 + AO353_03845 0.11 +0.0
821,550 - AO353_03845 0.11 -1.1
821,550 - AO353_03845 0.11 -0.5
821,593 + AO353_03845 0.16 +1.5
821,593 + AO353_03845 0.16 +3.4
821,594 - AO353_03845 0.16 -0.2
821,619 + AO353_03845 0.19 -1.3
821,619 + AO353_03845 0.19 +0.0
821,620 - AO353_03845 0.19 -0.2
821,620 - AO353_03845 0.19 -0.5
821,628 + AO353_03845 0.20 -0.1
821,628 + AO353_03845 0.20 -0.5
821,628 + AO353_03845 0.20 +0.5
821,628 + AO353_03845 0.20 +0.0
821,628 + AO353_03845 0.20 +0.6
821,628 + AO353_03845 0.20 -1.7
821,628 + AO353_03845 0.20 -0.5
821,628 + AO353_03845 0.20 -2.0
821,628 + AO353_03845 0.20 +1.0
821,629 - AO353_03845 0.20 -0.1
821,629 - AO353_03845 0.20 -0.2
821,629 - AO353_03845 0.20 +1.0
821,629 - AO353_03845 0.20 -0.4
821,629 - AO353_03845 0.20 -0.2
821,629 - AO353_03845 0.20 -0.5
821,629 - AO353_03845 0.20 +0.0
821,629 - AO353_03845 0.20 +0.5
821,629 - AO353_03845 0.20 +0.6
821,629 - AO353_03845 0.20 -1.4
821,629 - AO353_03845 0.20 +1.0
821,629 - AO353_03845 0.20 -0.2
821,909 + AO353_03845 0.53 -0.8
821,910 - AO353_03845 0.53 +0.6
821,991 + AO353_03845 0.63 -0.0
821,991 + AO353_03845 0.63 -1.2
821,991 + AO353_03845 0.63 +1.5
821,992 - AO353_03845 0.63 +0.6
821,992 - AO353_03845 0.63 -0.8
821,992 - AO353_03845 0.63 -0.5
821,992 - AO353_03845 0.63 -1.1
822,126 + AO353_03845 0.79 -1.0
822,126 + AO353_03845 0.79 +1.4
822,126 + AO353_03845 0.79 +1.6
822,126 + AO353_03845 0.79 -0.2
822,126 + AO353_03845 0.79 -0.3
822,126 + AO353_03845 0.79 -0.3
822,127 - AO353_03845 0.79 +0.2
822,127 - AO353_03845 0.79 -0.6
822,127 - AO353_03845 0.79 +0.6
822,127 - AO353_03845 0.79 +0.5
822,141 + AO353_03845 0.80 -0.7
822,142 - AO353_03845 0.80 +0.4
822,347 + +0.7
822,347 + +0.7
822,348 - -0.5
822,348 - -1.3
822,348 - +0.7
822,348 - -2.4

Or see this region's nucleotide sequence