Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02900

Experiment: acetate 34 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02895 and AO353_02900 are separated by 71 nucleotidesAO353_02900 and AO353_02905 are separated by 126 nucleotidesAO353_02905 and AO353_02910 overlap by 4 nucleotides AO353_02895: AO353_02895 - MFS transporter, at 613,712 to 615,100 _02895 AO353_02900: AO353_02900 - glutamate--ammonia ligase, at 615,172 to 616,515 _02900 AO353_02905: AO353_02905 - histidine kinase, at 616,642 to 617,334 _02905 AO353_02910: AO353_02910 - chemotaxis protein CheY, at 617,331 to 618,935 _02910 Position (kb) 615 616 617Strain fitness (log2 ratio) -2 -1 0 1 2 3at 614.224 kb on + strand, within AO353_02895at 614.309 kb on + strand, within AO353_02895at 614.322 kb on + strand, within AO353_02895at 614.323 kb on - strand, within AO353_02895at 614.430 kb on + strand, within AO353_02895at 614.430 kb on + strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.431 kb on - strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.448 kb on + strand, within AO353_02895at 614.449 kb on - strand, within AO353_02895at 614.449 kb on - strand, within AO353_02895at 614.449 kb on - strand, within AO353_02895at 614.486 kb on - strand, within AO353_02895at 614.683 kb on - strand, within AO353_02895at 614.683 kb on - strand, within AO353_02895at 614.697 kb on + strandat 614.698 kb on - strand, within AO353_02895at 614.766 kb on + strand, within AO353_02895at 614.766 kb on + strand, within AO353_02895at 614.766 kb on + strand, within AO353_02895at 614.766 kb on + strand, within AO353_02895at 614.766 kb on + strand, within AO353_02895at 614.766 kb on + strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.767 kb on - strand, within AO353_02895at 614.891 kb on - strand, within AO353_02895at 614.949 kb on + strand, within AO353_02895at 614.949 kb on + strand, within AO353_02895at 614.949 kb on + strand, within AO353_02895at 614.950 kb on - strand, within AO353_02895at 614.950 kb on - strand, within AO353_02895at 614.950 kb on - strand, within AO353_02895at 614.950 kb on - strand, within AO353_02895at 615.018 kb on + strandat 615.018 kb on + strandat 615.018 kb on + strandat 615.018 kb on + strandat 615.019 kb on - strandat 615.019 kb on - strandat 615.019 kb on - strandat 615.019 kb on - strandat 615.022 kb on + strandat 615.022 kb on + strandat 615.022 kb on + strandat 615.022 kb on + strandat 615.022 kb on + strandat 615.022 kb on + strandat 615.022 kb on + strandat 615.022 kb on + strandat 615.022 kb on + strandat 615.023 kb on - strandat 615.023 kb on - strandat 615.023 kb on - strandat 615.023 kb on - strandat 615.023 kb on - strandat 615.023 kb on - strandat 615.066 kb on + strandat 615.067 kb on - strandat 615.257 kb on + strandat 615.257 kb on + strandat 615.258 kb on - strandat 615.258 kb on - strandat 615.258 kb on - strandat 615.258 kb on - strandat 615.303 kb on + strandat 615.303 kb on + strandat 615.304 kb on - strandat 615.304 kb on - strandat 615.304 kb on - strandat 615.304 kb on - strandat 615.304 kb on - strandat 615.336 kb on + strand, within AO353_02900at 615.336 kb on + strand, within AO353_02900at 615.337 kb on - strand, within AO353_02900at 615.337 kb on - strand, within AO353_02900at 615.337 kb on - strand, within AO353_02900at 615.416 kb on + strand, within AO353_02900at 615.416 kb on + strand, within AO353_02900at 615.416 kb on + strand, within AO353_02900at 615.417 kb on - strand, within AO353_02900at 615.417 kb on - strand, within AO353_02900at 615.417 kb on - strand, within AO353_02900at 615.417 kb on - strand, within AO353_02900at 615.452 kb on + strand, within AO353_02900at 615.452 kb on + strand, within AO353_02900at 615.452 kb on + strand, within AO353_02900at 615.453 kb on - strand, within AO353_02900at 615.545 kb on + strand, within AO353_02900at 615.546 kb on - strand, within AO353_02900at 615.546 kb on - strand, within AO353_02900at 615.575 kb on + strand, within AO353_02900at 615.575 kb on + strand, within AO353_02900at 615.575 kb on + strand, within AO353_02900at 615.576 kb on - strand, within AO353_02900at 615.596 kb on + strand, within AO353_02900at 615.596 kb on + strand, within AO353_02900at 615.596 kb on + strand, within AO353_02900at 615.597 kb on - strand, within AO353_02900at 615.768 kb on + strand, within AO353_02900at 615.769 kb on - strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.832 kb on + strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.833 kb on - strand, within AO353_02900at 615.931 kb on - strand, within AO353_02900at 615.965 kb on + strand, within AO353_02900at 615.966 kb on - strand, within AO353_02900at 615.966 kb on - strand, within AO353_02900at 615.966 kb on - strand, within AO353_02900at 616.295 kb on - strand, within AO353_02900at 616.317 kb on - strand, within AO353_02900at 616.317 kb on - strand, within AO353_02900at 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.521 kb on + strandat 616.522 kb on - strandat 616.559 kb on - strandat 616.559 kb on - strandat 616.559 kb on - strandat 616.565 kb on + strandat 616.565 kb on + strandat 616.565 kb on + strandat 616.566 kb on - strandat 616.566 kb on - strandat 616.566 kb on - strandat 616.585 kb on + strandat 616.585 kb on + strandat 616.586 kb on - strandat 616.652 kb on + strandat 616.652 kb on + strandat 616.653 kb on - strandat 616.740 kb on + strand, within AO353_02905at 616.740 kb on + strand, within AO353_02905at 616.741 kb on - strand, within AO353_02905at 616.741 kb on - strandat 616.755 kb on - strand, within AO353_02905at 616.755 kb on - strand, within AO353_02905at 616.755 kb on - strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.798 kb on + strand, within AO353_02905at 616.799 kb on - strand, within AO353_02905at 616.799 kb on - strand, within AO353_02905at 616.799 kb on - strand, within AO353_02905at 616.799 kb on - strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.802 kb on + strand, within AO353_02905at 616.803 kb on - strand, within AO353_02905at 616.803 kb on - strand, within AO353_02905at 616.803 kb on - strand, within AO353_02905at 616.803 kb on - strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.006 kb on + strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.007 kb on - strand, within AO353_02905at 617.087 kb on + strand, within AO353_02905at 617.087 kb on + strand, within AO353_02905at 617.088 kb on - strand, within AO353_02905at 617.088 kb on - strand, within AO353_02905at 617.088 kb on - strand, within AO353_02905at 617.126 kb on + strand, within AO353_02905at 617.126 kb on + strand, within AO353_02905at 617.126 kb on + strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.127 kb on - strand, within AO353_02905at 617.174 kb on + strand, within AO353_02905at 617.174 kb on + strand, within AO353_02905at 617.175 kb on - strand, within AO353_02905at 617.281 kb on + strandat 617.281 kb on + strandat 617.420 kb on + strandat 617.420 kb on + strandat 617.420 kb on + strandat 617.420 kb on + strandat 617.420 kb on + strandat 617.421 kb on - strandat 617.421 kb on - strandat 617.486 kb on + strandat 617.498 kb on + strand, within AO353_02910at 617.498 kb on + strand, within AO353_02910at 617.498 kb on + strand, within AO353_02910at 617.498 kb on + strand, within AO353_02910

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 34 mM
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614,224 + AO353_02895 0.37 -0.0
614,309 + AO353_02895 0.43 +1.0
614,322 + AO353_02895 0.44 -0.4
614,323 - AO353_02895 0.44 -0.8
614,430 + AO353_02895 0.52 -0.6
614,430 + AO353_02895 0.52 +0.8
614,431 - AO353_02895 0.52 +1.0
614,431 - AO353_02895 0.52 +0.2
614,431 - AO353_02895 0.52 -0.6
614,431 - AO353_02895 0.52 +2.0
614,431 - AO353_02895 0.52 -1.6
614,431 - AO353_02895 0.52 -1.4
614,431 - AO353_02895 0.52 -1.5
614,431 - AO353_02895 0.52 +1.0
614,431 - AO353_02895 0.52 +1.0
614,448 + AO353_02895 0.53 +0.6
614,448 + AO353_02895 0.53 +1.3
614,448 + AO353_02895 0.53 +0.2
614,448 + AO353_02895 0.53 +0.3
614,448 + AO353_02895 0.53 +3.3
614,448 + AO353_02895 0.53 +0.6
614,449 - AO353_02895 0.53 -0.4
614,449 - AO353_02895 0.53 -0.7
614,449 - AO353_02895 0.53 -0.2
614,486 - AO353_02895 0.56 -1.0
614,683 - AO353_02895 0.70 +1.0
614,683 - AO353_02895 0.70 -0.4
614,697 + +1.0
614,698 - AO353_02895 0.71 -0.6
614,766 + AO353_02895 0.76 +0.7
614,766 + AO353_02895 0.76 -0.6
614,766 + AO353_02895 0.76 -0.8
614,766 + AO353_02895 0.76 -1.0
614,766 + AO353_02895 0.76 +1.0
614,766 + AO353_02895 0.76 -0.8
614,767 - AO353_02895 0.76 +1.0
614,767 - AO353_02895 0.76 +1.4
614,767 - AO353_02895 0.76 -0.6
614,767 - AO353_02895 0.76 -1.6
614,767 - AO353_02895 0.76 +0.4
614,767 - AO353_02895 0.76 +0.3
614,767 - AO353_02895 0.76 -0.6
614,767 - AO353_02895 0.76 +2.0
614,767 - AO353_02895 0.76 +0.8
614,767 - AO353_02895 0.76 -0.2
614,767 - AO353_02895 0.76 +1.3
614,891 - AO353_02895 0.85 +0.1
614,949 + AO353_02895 0.89 +0.5
614,949 + AO353_02895 0.89 +1.5
614,949 + AO353_02895 0.89 +1.0
614,950 - AO353_02895 0.89 -1.3
614,950 - AO353_02895 0.89 +0.2
614,950 - AO353_02895 0.89 +0.7
614,950 - AO353_02895 0.89 -1.2
615,018 + +1.0
615,018 + +1.4
615,018 + -1.4
615,018 + +0.5
615,019 - -0.4
615,019 - -0.9
615,019 - -0.2
615,019 - -0.3
615,022 + -0.8
615,022 + +0.4
615,022 + -1.4
615,022 + +0.9
615,022 + -0.6
615,022 + -0.6
615,022 + +1.0
615,022 + +0.4
615,022 + -0.4
615,023 - -1.0
615,023 - +0.5
615,023 - +0.7
615,023 - +0.3
615,023 - +0.5
615,023 - -0.5
615,066 + -0.1
615,067 - -1.4
615,257 + -0.3
615,257 + -0.2
615,258 - +1.2
615,258 - +0.8
615,258 - -0.0
615,258 - +2.8
615,303 + -0.5
615,303 + +0.7
615,304 - -0.6
615,304 - -1.4
615,304 - -0.5
615,304 - -0.0
615,304 - -1.4
615,336 + AO353_02900 0.12 +0.3
615,336 + AO353_02900 0.12 -2.4
615,337 - AO353_02900 0.12 +1.7
615,337 - AO353_02900 0.12 -0.6
615,337 - AO353_02900 0.12 +0.0
615,416 + AO353_02900 0.18 +2.0
615,416 + AO353_02900 0.18 -2.3
615,416 + AO353_02900 0.18 -0.4
615,417 - AO353_02900 0.18 +2.5
615,417 - AO353_02900 0.18 -2.2
615,417 - AO353_02900 0.18 +0.2
615,417 - AO353_02900 0.18 +1.6
615,452 + AO353_02900 0.21 -0.3
615,452 + AO353_02900 0.21 -0.6
615,452 + AO353_02900 0.21 +0.5
615,453 - AO353_02900 0.21 -2.2
615,545 + AO353_02900 0.28 +0.1
615,546 - AO353_02900 0.28 +1.0
615,546 - AO353_02900 0.28 +0.0
615,575 + AO353_02900 0.30 +1.7
615,575 + AO353_02900 0.30 +1.7
615,575 + AO353_02900 0.30 +0.5
615,576 - AO353_02900 0.30 +0.1
615,596 + AO353_02900 0.32 +1.2
615,596 + AO353_02900 0.32 +0.4
615,596 + AO353_02900 0.32 +1.0
615,597 - AO353_02900 0.32 -0.2
615,768 + AO353_02900 0.44 -2.0
615,769 - AO353_02900 0.44 -1.8
615,832 + AO353_02900 0.49 +1.0
615,832 + AO353_02900 0.49 +1.4
615,832 + AO353_02900 0.49 +1.1
615,832 + AO353_02900 0.49 -0.9
615,832 + AO353_02900 0.49 -0.6
615,832 + AO353_02900 0.49 +0.5
615,832 + AO353_02900 0.49 -0.6
615,832 + AO353_02900 0.49 +0.3
615,832 + AO353_02900 0.49 -0.0
615,833 - AO353_02900 0.49 +0.5
615,833 - AO353_02900 0.49 -0.6
615,833 - AO353_02900 0.49 -0.0
615,833 - AO353_02900 0.49 +0.6
615,833 - AO353_02900 0.49 -0.6
615,833 - AO353_02900 0.49 +0.6
615,833 - AO353_02900 0.49 +0.4
615,931 - AO353_02900 0.56 -0.5
615,965 + AO353_02900 0.59 +2.1
615,966 - AO353_02900 0.59 +1.6
615,966 - AO353_02900 0.59 +0.6
615,966 - AO353_02900 0.59 -0.0
616,295 - AO353_02900 0.84 -0.4
616,317 - AO353_02900 0.85 -0.4
616,317 - AO353_02900 0.85 -0.5
616,521 + -0.8
616,521 + +0.1
616,521 + -0.6
616,521 + +0.4
616,521 + +0.8
616,521 + -0.0
616,521 + -0.0
616,522 - +0.2
616,559 - +0.4
616,559 - +0.6
616,559 - +0.7
616,565 + -0.4
616,565 + -0.3
616,565 + -1.8
616,566 - -0.8
616,566 - +0.2
616,566 - -0.2
616,585 + -0.0
616,585 + -0.0
616,586 - +0.1
616,652 + +0.2
616,652 + +0.5
616,653 - +0.6
616,740 + AO353_02905 0.14 -0.0
616,740 + AO353_02905 0.14 -0.2
616,741 - AO353_02905 0.14 -1.6
616,741 - -0.0
616,755 - AO353_02905 0.16 +2.0
616,755 - AO353_02905 0.16 -0.2
616,755 - AO353_02905 0.16 -0.5
616,798 + AO353_02905 0.23 -0.6
616,798 + AO353_02905 0.23 -0.4
616,798 + AO353_02905 0.23 +0.2
616,798 + AO353_02905 0.23 -1.4
616,798 + AO353_02905 0.23 +1.4
616,798 + AO353_02905 0.23 +0.4
616,798 + AO353_02905 0.23 +0.3
616,799 - AO353_02905 0.23 -0.3
616,799 - AO353_02905 0.23 -2.0
616,799 - AO353_02905 0.23 +0.7
616,799 - AO353_02905 0.23 -0.1
616,802 + AO353_02905 0.23 +1.7
616,802 + AO353_02905 0.23 +1.3
616,802 + AO353_02905 0.23 -0.6
616,802 + AO353_02905 0.23 -0.6
616,802 + AO353_02905 0.23 -0.6
616,803 - AO353_02905 0.23 -0.0
616,803 - AO353_02905 0.23 -1.6
616,803 - AO353_02905 0.23 +1.2
616,803 - AO353_02905 0.23 -0.5
617,006 + AO353_02905 0.53 -0.3
617,006 + AO353_02905 0.53 +0.4
617,006 + AO353_02905 0.53 -0.2
617,006 + AO353_02905 0.53 +0.4
617,006 + AO353_02905 0.53 -1.5
617,007 - AO353_02905 0.53 +0.0
617,007 - AO353_02905 0.53 +1.0
617,007 - AO353_02905 0.53 -0.3
617,007 - AO353_02905 0.53 +2.3
617,007 - AO353_02905 0.53 -0.0
617,007 - AO353_02905 0.53 +2.0
617,007 - AO353_02905 0.53 -1.4
617,087 + AO353_02905 0.64 -0.4
617,087 + AO353_02905 0.64 +0.2
617,088 - AO353_02905 0.64 +0.7
617,088 - AO353_02905 0.64 -0.6
617,088 - AO353_02905 0.64 -0.6
617,126 + AO353_02905 0.70 -2.5
617,126 + AO353_02905 0.70 +0.2
617,126 + AO353_02905 0.70 +0.2
617,127 - AO353_02905 0.70 +0.3
617,127 - AO353_02905 0.70 -0.5
617,127 - AO353_02905 0.70 -1.0
617,127 - AO353_02905 0.70 -0.2
617,127 - AO353_02905 0.70 +1.3
617,174 + AO353_02905 0.77 +0.8
617,174 + AO353_02905 0.77 -0.6
617,175 - AO353_02905 0.77 +0.2
617,281 + -0.1
617,281 + -0.8
617,420 + -0.6
617,420 + +0.0
617,420 + -0.4
617,420 + +0.4
617,420 + +0.7
617,421 - -0.3
617,421 - +1.5
617,486 + +1.5
617,498 + AO353_02910 0.10 +0.4
617,498 + AO353_02910 0.10 -0.8
617,498 + AO353_02910 0.10 +1.0
617,498 + AO353_02910 0.10 +2.1

Or see this region's nucleotide sequence