Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00935

Experiment: acetate 34 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00925 and AO353_00930 are separated by 170 nucleotidesAO353_00930 and AO353_00935 are separated by 174 nucleotidesAO353_00935 and AO353_00940 are separated by 201 nucleotides AO353_00925: AO353_00925 - aminodeoxychorismate synthase component I, at 210,558 to 211,901 _00925 AO353_00930: AO353_00930 - phosphoserine phosphatase, at 212,072 to 212,689 _00930 AO353_00935: AO353_00935 - phosphoadenosine phosphosulfate reductase, at 212,864 to 213,598 _00935 AO353_00940: AO353_00940 - LysR family transcriptional regulator, at 213,800 to 214,723 _00940 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2 3at 211.993 kb on + strandat 211.994 kb on - strandat 211.994 kb on - strandat 212.002 kb on - strandat 212.002 kb on - strandat 212.073 kb on + strandat 212.073 kb on + strandat 212.073 kb on + strandat 212.229 kb on + strand, within AO353_00930at 212.229 kb on + strand, within AO353_00930at 212.229 kb on + strand, within AO353_00930at 212.229 kb on + strand, within AO353_00930at 212.230 kb on - strand, within AO353_00930at 212.230 kb on - strand, within AO353_00930at 212.259 kb on + strand, within AO353_00930at 212.259 kb on + strand, within AO353_00930at 212.259 kb on + strand, within AO353_00930at 212.259 kb on + strand, within AO353_00930at 212.260 kb on - strand, within AO353_00930at 212.260 kb on - strand, within AO353_00930at 212.260 kb on - strand, within AO353_00930at 212.260 kb on - strand, within AO353_00930at 212.410 kb on - strand, within AO353_00930at 212.585 kb on - strand, within AO353_00930at 212.706 kb on + strandat 212.706 kb on + strandat 212.707 kb on - strandat 212.707 kb on - strandat 212.707 kb on - strandat 212.748 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.758 kb on + strandat 212.759 kb on - strandat 212.808 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.822 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 212.824 kb on + strandat 213.650 kb on - strandat 213.650 kb on - strandat 213.706 kb on - strandat 213.706 kb on - strandat 213.724 kb on - strandat 213.724 kb on - strandat 213.724 kb on - strandat 213.724 kb on - strandat 213.724 kb on - strandat 213.724 kb on - strandat 213.724 kb on - strandat 213.724 kb on - strandat 213.751 kb on + strandat 213.751 kb on + strandat 213.752 kb on - strandat 213.752 kb on - strandat 213.752 kb on - strandat 213.903 kb on + strand, within AO353_00940at 213.903 kb on + strand, within AO353_00940at 213.904 kb on - strand, within AO353_00940at 213.904 kb on - strand, within AO353_00940at 213.904 kb on - strand, within AO353_00940at 213.904 kb on - strand, within AO353_00940at 213.904 kb on - strand, within AO353_00940at 213.904 kb on - strand, within AO353_00940at 213.906 kb on + strand, within AO353_00940at 213.906 kb on + strand, within AO353_00940at 213.906 kb on + strand, within AO353_00940at 213.906 kb on + strand, within AO353_00940at 213.906 kb on + strand, within AO353_00940at 213.906 kb on + strand, within AO353_00940at 213.906 kb on + strand, within AO353_00940at 213.907 kb on - strand, within AO353_00940at 213.907 kb on - strand, within AO353_00940at 213.907 kb on - strand, within AO353_00940at 213.907 kb on - strand, within AO353_00940at 213.907 kb on - strand, within AO353_00940at 213.907 kb on - strand, within AO353_00940at 213.907 kb on - strand, within AO353_00940at 213.907 kb on - strand, within AO353_00940at 213.907 kb on - strand, within AO353_00940at 213.933 kb on + strand, within AO353_00940at 213.933 kb on + strand, within AO353_00940at 213.934 kb on - strand, within AO353_00940at 213.934 kb on - strand, within AO353_00940at 213.934 kb on - strand, within AO353_00940at 214.172 kb on + strand, within AO353_00940at 214.172 kb on + strand, within AO353_00940at 214.173 kb on - strand, within AO353_00940at 214.173 kb on - strand, within AO353_00940at 214.173 kb on - strand, within AO353_00940at 214.173 kb on - strand, within AO353_00940at 214.173 kb on - strand, within AO353_00940at 214.173 kb on - strand, within AO353_00940at 214.173 kb on - strand, within AO353_00940at 214.173 kb on - strand, within AO353_00940at 214.213 kb on - strand, within AO353_00940at 214.407 kb on + strand, within AO353_00940at 214.407 kb on + strand, within AO353_00940at 214.407 kb on + strand, within AO353_00940at 214.407 kb on + strand, within AO353_00940at 214.407 kb on + strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940at 214.408 kb on - strand, within AO353_00940

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 34 mM
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211,993 + -0.7
211,994 - +1.0
211,994 - -0.4
212,002 - -1.1
212,002 - +1.3
212,073 + -1.7
212,073 + -0.7
212,073 + +0.7
212,229 + AO353_00930 0.25 +0.9
212,229 + AO353_00930 0.25 +0.6
212,229 + AO353_00930 0.25 -1.3
212,229 + AO353_00930 0.25 -0.7
212,230 - AO353_00930 0.26 +1.9
212,230 - AO353_00930 0.26 -0.7
212,259 + AO353_00930 0.30 +0.6
212,259 + AO353_00930 0.30 +1.6
212,259 + AO353_00930 0.30 +0.3
212,259 + AO353_00930 0.30 -0.7
212,260 - AO353_00930 0.30 -0.1
212,260 - AO353_00930 0.30 -0.2
212,260 - AO353_00930 0.30 -2.4
212,260 - AO353_00930 0.30 -0.4
212,410 - AO353_00930 0.55 +0.7
212,585 - AO353_00930 0.83 +0.1
212,706 + +0.5
212,706 + +0.9
212,707 - -0.4
212,707 - +0.9
212,707 - -1.1
212,748 + +1.9
212,758 + +0.4
212,758 + +1.6
212,758 + -0.3
212,758 + +0.6
212,758 + -0.1
212,758 + +1.1
212,759 - -0.2
212,808 + +0.9
212,822 + +0.1
212,822 + +0.2
212,822 + -0.3
212,822 + +0.9
212,822 + +0.3
212,822 + -0.9
212,822 + +1.3
212,822 + -0.3
212,822 + -0.8
212,822 + +1.3
212,822 + -1.4
212,822 + +0.7
212,822 + -0.7
212,824 + +0.9
212,824 + +3.1
212,824 + +1.5
212,824 + -0.1
212,824 + +0.5
212,824 + -0.5
212,824 + +1.2
212,824 + +0.1
212,824 + -0.1
212,824 + -1.6
212,824 + +1.4
212,824 + +0.6
212,824 + -1.9
213,650 - +0.2
213,650 - -0.7
213,706 - +1.5
213,706 - +0.5
213,724 - +0.6
213,724 - -0.5
213,724 - -0.5
213,724 - +0.9
213,724 - +0.9
213,724 - +0.7
213,724 - +1.3
213,724 - +1.9
213,751 + +1.7
213,751 + +0.1
213,752 - -2.3
213,752 - -0.2
213,752 - -0.7
213,903 + AO353_00940 0.11 +0.0
213,903 + AO353_00940 0.11 +0.0
213,904 - AO353_00940 0.11 +0.9
213,904 - AO353_00940 0.11 -0.7
213,904 - AO353_00940 0.11 +0.9
213,904 - AO353_00940 0.11 +0.6
213,904 - AO353_00940 0.11 -0.5
213,904 - AO353_00940 0.11 -0.4
213,906 + AO353_00940 0.11 -0.1
213,906 + AO353_00940 0.11 -0.6
213,906 + AO353_00940 0.11 +1.1
213,906 + AO353_00940 0.11 -1.9
213,906 + AO353_00940 0.11 +0.4
213,906 + AO353_00940 0.11 -0.1
213,906 + AO353_00940 0.11 +0.8
213,907 - AO353_00940 0.12 +0.4
213,907 - AO353_00940 0.12 +0.6
213,907 - AO353_00940 0.12 -1.1
213,907 - AO353_00940 0.12 +1.3
213,907 - AO353_00940 0.12 -0.1
213,907 - AO353_00940 0.12 +2.5
213,907 - AO353_00940 0.12 -1.4
213,907 - AO353_00940 0.12 -0.4
213,907 - AO353_00940 0.12 +0.9
213,933 + AO353_00940 0.14 +1.1
213,933 + AO353_00940 0.14 -0.7
213,934 - AO353_00940 0.15 +1.1
213,934 - AO353_00940 0.15 -0.4
213,934 - AO353_00940 0.15 +0.7
214,172 + AO353_00940 0.40 -0.4
214,172 + AO353_00940 0.40 +1.5
214,173 - AO353_00940 0.40 +0.3
214,173 - AO353_00940 0.40 -0.9
214,173 - AO353_00940 0.40 +0.1
214,173 - AO353_00940 0.40 +0.6
214,173 - AO353_00940 0.40 -0.2
214,173 - AO353_00940 0.40 +1.5
214,173 - AO353_00940 0.40 +0.5
214,173 - AO353_00940 0.40 +0.0
214,213 - AO353_00940 0.45 +2.1
214,407 + AO353_00940 0.66 +1.3
214,407 + AO353_00940 0.66 +1.5
214,407 + AO353_00940 0.66 -0.1
214,407 + AO353_00940 0.66 +0.0
214,407 + AO353_00940 0.66 +0.3
214,408 - AO353_00940 0.66 +0.2
214,408 - AO353_00940 0.66 +0.2
214,408 - AO353_00940 0.66 +0.9
214,408 - AO353_00940 0.66 -0.2
214,408 - AO353_00940 0.66 -0.7
214,408 - AO353_00940 0.66 +0.6
214,408 - AO353_00940 0.66 +1.5
214,408 - AO353_00940 0.66 -0.4
214,408 - AO353_00940 0.66 +0.9
214,408 - AO353_00940 0.66 -0.6
214,408 - AO353_00940 0.66 +0.7
214,408 - AO353_00940 0.66 +0.1
214,408 - AO353_00940 0.66 -1.4

Or see this region's nucleotide sequence