Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3988 and Shewana3_3989 are separated by 161 nucleotides Shewana3_3989 and Shewana3_3990 overlap by 4 nucleotides Shewana3_3990 and Shewana3_3991 are separated by 406 nucleotides
Shewana3_3988: Shewana3_3988 - glycerol-3-phosphate acyltransferase (RefSeq), at 4,788,932 to 4,791,355
_3988
Shewana3_3989: Shewana3_3989 - LexA repressor (RefSeq), at 4,791,517 to 4,792,137
_3989
Shewana3_3990: Shewana3_3990 - hypothetical protein (RefSeq), at 4,792,134 to 4,792,646
_3990
Shewana3_3991: Shewana3_3991 - cytochrome c oxidase, subunit II (RefSeq), at 4,793,053 to 4,794,594
_3991
Position (kb)
4791
4792
4793 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4791.376 kb on - strand at 4791.597 kb on - strand, within Shewana3_3989 at 4791.654 kb on + strand, within Shewana3_3989 at 4791.662 kb on - strand, within Shewana3_3989 at 4791.797 kb on + strand, within Shewana3_3989 at 4791.816 kb on + strand, within Shewana3_3989 at 4791.884 kb on + strand, within Shewana3_3989 at 4791.892 kb on - strand, within Shewana3_3989 at 4792.096 kb on - strand at 4792.096 kb on - strand at 4792.158 kb on - strand at 4792.236 kb on - strand, within Shewana3_3990 at 4792.268 kb on - strand, within Shewana3_3990 at 4792.371 kb on - strand, within Shewana3_3990 at 4792.371 kb on - strand, within Shewana3_3990 at 4792.389 kb on + strand, within Shewana3_3990 at 4792.389 kb on + strand, within Shewana3_3990 at 4792.488 kb on + strand, within Shewana3_3990 at 4792.590 kb on + strand, within Shewana3_3990 at 4792.878 kb on + strand at 4792.987 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 4,791,376 - +1.8 4,791,597 - Shewana3_3989 0.13 +2.4 4,791,654 + Shewana3_3989 0.22 +1.9 4,791,662 - Shewana3_3989 0.23 +1.4 4,791,797 + Shewana3_3989 0.45 +0.9 4,791,816 + Shewana3_3989 0.48 +1.1 4,791,884 + Shewana3_3989 0.59 +1.1 4,791,892 - Shewana3_3989 0.60 +1.4 4,792,096 - +1.4 4,792,096 - +1.4 4,792,158 - -0.4 4,792,236 - Shewana3_3990 0.20 -2.0 4,792,268 - Shewana3_3990 0.26 -0.1 4,792,371 - Shewana3_3990 0.46 -2.6 4,792,371 - Shewana3_3990 0.46 -0.2 4,792,389 + Shewana3_3990 0.50 +3.0 4,792,389 + Shewana3_3990 0.50 +0.4 4,792,488 + Shewana3_3990 0.69 -1.8 4,792,590 + Shewana3_3990 0.89 +1.0 4,792,878 + -0.2 4,792,987 + -0.2
Or see this region's nucleotide sequence