Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3936

Experiment: Tetracycline 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.001 mg/ml
4,728,610	-				+0.1
4,728,784	-				+0.3
4,728,931	+		Shewana3_3935	0.30	+2.1
4,728,939	-		Shewana3_3935	0.33	-0.2
4,728,963	-		Shewana3_3935	0.40	-0.1
4,728,963	-		Shewana3_3935	0.40	+4.0
4,728,974	+		Shewana3_3935	0.44	+0.3
4,729,031	-		Shewana3_3935	0.62	-0.1
4,729,135	+				-1.1
4,729,260	-				-0.3
4,729,355	-				-0.4
4,729,355	-				-0.1
4,729,355	-				-0.1
4,729,355	-				-0.4
4,729,355	-				-0.0
4,729,508	+				+0.2
4,729,518	+				+0.0
4,729,527	+				+0.1
4,729,528	+				-0.3
4,729,624	+				+0.3
4,729,657	-				-0.1
4,729,680	+				+1.4
4,729,680	+				+0.8
4,729,705	+				-0.2
4,729,705	+				-0.5
4,729,705	+				+0.1
4,729,705	+				+0.0
4,729,705	+				-0.0
4,729,713	-				-0.2
4,729,713	-				-0.3
4,729,713	-				-0.1
4,729,715	+				+0.2
4,729,715	+				-0.1
4,729,715	+				+0.3
4,729,715	+				+0.1
4,729,715	+				-0.7
4,729,720	-				+0.9
4,729,720	-				-0.1
4,729,723	-				+0.0
4,729,723	-				-0.1
4,729,723	-				-0.2
4,729,724	+				+2.2
4,729,724	+				-1.1
4,729,726	+				-0.8
4,729,732	-				-0.3
4,729,744	+				+0.6
4,729,746	-				+0.7
4,729,746	-				-0.0
4,729,746	-				+0.0
4,729,780	-		Shewana3_3936	0.11	-0.1
4,729,781	-		Shewana3_3936	0.11	-0.5
4,729,782	-		Shewana3_3936	0.11	-0.3
4,729,800	+		Shewana3_3936	0.12	-0.7
4,729,803	-		Shewana3_3936	0.12	-0.4
4,729,824	+		Shewana3_3936	0.13	+0.6
4,729,839	-		Shewana3_3936	0.14	-0.2
4,729,865	+		Shewana3_3936	0.15	+0.5
4,729,895	+		Shewana3_3936	0.17	-0.3
4,729,903	-		Shewana3_3936	0.17	+0.8
4,729,926	-		Shewana3_3936	0.18	+0.2
4,729,943	+		Shewana3_3936	0.19	+0.9
4,729,951	+		Shewana3_3936	0.20	+0.4
4,729,967	+		Shewana3_3936	0.20	+0.7
4,730,030	-		Shewana3_3936	0.24	+0.1
4,730,141	+		Shewana3_3936	0.30	+0.8
4,730,141	+		Shewana3_3936	0.30	-0.1
4,730,141	+		Shewana3_3936	0.30	-1.9
4,730,141	+		Shewana3_3936	0.30	+1.0
4,730,141	+		Shewana3_3936	0.30	+0.0
4,730,141	+		Shewana3_3936	0.30	-0.1
4,730,141	+		Shewana3_3936	0.30	+0.4
4,730,141	+		Shewana3_3936	0.30	-0.6
4,730,141	+		Shewana3_3936	0.30	+1.4
4,730,141	+		Shewana3_3936	0.30	+0.4
4,730,141	+		Shewana3_3936	0.30	+3.6
4,730,148	-		Shewana3_3936	0.30	+1.4
4,730,148	-		Shewana3_3936	0.30	+0.4
4,730,149	-		Shewana3_3936	0.30	-0.1
4,730,149	-		Shewana3_3936	0.30	+0.2
4,730,149	-		Shewana3_3936	0.30	-0.2
4,730,149	-		Shewana3_3936	0.30	+0.2
4,730,149	-		Shewana3_3936	0.30	+2.4
4,730,149	-		Shewana3_3936	0.30	+0.2
4,730,149	-		Shewana3_3936	0.30	+0.9
4,730,149	-		Shewana3_3936	0.30	-0.1
4,730,150	+		Shewana3_3936	0.30	+1.0
4,730,150	+		Shewana3_3936	0.30	+0.7
4,730,155	+		Shewana3_3936	0.30	-0.4
4,730,155	+		Shewana3_3936	0.30	+0.4
4,730,155	+		Shewana3_3936	0.30	-0.5
4,730,156	-		Shewana3_3936	0.30	-0.6
4,730,158	-		Shewana3_3936	0.31	+1.4
4,730,163	-		Shewana3_3936	0.31	-2.2
4,730,163	-		Shewana3_3936	0.31	+0.4
4,730,163	-		Shewana3_3936	0.31	+1.0
4,730,163	-		Shewana3_3936	0.31	+0.1
4,730,211	-		Shewana3_3936	0.33	+2.0
4,730,221	+		Shewana3_3936	0.34	+3.4
4,730,221	+		Shewana3_3936	0.34	+0.2
4,730,233	+		Shewana3_3936	0.35	+0.2
4,730,240	+		Shewana3_3936	0.35	-0.8
4,730,241	-		Shewana3_3936	0.35	-1.1
4,730,303	+		Shewana3_3936	0.38	-1.4
4,730,311	-		Shewana3_3936	0.39	+0.2
4,730,393	+		Shewana3_3936	0.43	-0.9
4,730,393	+		Shewana3_3936	0.43	+0.5
4,730,393	+		Shewana3_3936	0.43	+0.2
4,730,395	+		Shewana3_3936	0.43	+0.5
4,730,398	-		Shewana3_3936	0.43	-0.2
4,730,401	-		Shewana3_3936	0.43	+0.4
4,730,403	+		Shewana3_3936	0.44	-0.1
4,730,411	-		Shewana3_3936	0.44	+0.4
4,730,455	+		Shewana3_3936	0.46	-0.8
4,730,475	+		Shewana3_3936	0.47	-0.3
4,730,475	+		Shewana3_3936	0.47	-0.1
4,730,477	-		Shewana3_3936	0.48	+1.4
4,730,483	-		Shewana3_3936	0.48	-0.1
4,730,495	+		Shewana3_3936	0.48	+0.6
4,730,495	+		Shewana3_3936	0.48	+3.0
4,730,504	-		Shewana3_3936	0.49	+1.4
4,730,507	+		Shewana3_3936	0.49	+1.6
4,730,507	+		Shewana3_3936	0.49	+0.4
4,730,507	+		Shewana3_3936	0.49	-0.7
4,730,507	+		Shewana3_3936	0.49	-1.0
4,730,507	+		Shewana3_3936	0.49	-0.6
4,730,507	+		Shewana3_3936	0.49	+0.4
4,730,507	+		Shewana3_3936	0.49	-2.2
4,730,507	+		Shewana3_3936	0.49	+0.4
4,730,507	+		Shewana3_3936	0.49	+0.0
4,730,507	+		Shewana3_3936	0.49	-0.6
4,730,507	+		Shewana3_3936	0.49	+1.4
4,730,507	+		Shewana3_3936	0.49	+2.4
4,730,507	+		Shewana3_3936	0.49	+0.5
4,730,507	+		Shewana3_3936	0.49	+0.7
4,730,507	+		Shewana3_3936	0.49	+0.0
4,730,507	+		Shewana3_3936	0.49	-1.2
4,730,507	+		Shewana3_3936	0.49	+0.7
4,730,507	+		Shewana3_3936	0.49	+0.4
4,730,507	+		Shewana3_3936	0.49	+0.5
4,730,507	+		Shewana3_3936	0.49	+0.6
4,730,507	+		Shewana3_3936	0.49	-1.4
4,730,507	+		Shewana3_3936	0.49	+0.3
4,730,507	+		Shewana3_3936	0.49	+0.4
4,730,507	+		Shewana3_3936	0.49	+0.7
4,730,507	+		Shewana3_3936	0.49	+1.0
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	-0.1
4,730,515	-		Shewana3_3936	0.50	+0.8
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	-0.3
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+0.8
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+0.1
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.0
4,730,515	-		Shewana3_3936	0.50	+0.4
4,730,515	-		Shewana3_3936	0.50	+0.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,515	-		Shewana3_3936	0.50	+0.2
4,730,515	-		Shewana3_3936	0.50	+1.4
4,730,526	+		Shewana3_3936	0.50	-0.4
4,730,526	+		Shewana3_3936	0.50	-0.1
4,730,526	+		Shewana3_3936	0.50	+0.4
4,730,526	+		Shewana3_3936	0.50	+0.4
4,730,526	+		Shewana3_3936	0.50	+1.4
4,730,527	-		Shewana3_3936	0.50	+0.4
4,730,534	-		Shewana3_3936	0.51	+1.4
4,730,534	-		Shewana3_3936	0.51	+0.4
4,730,542	+		Shewana3_3936	0.51	-0.4
4,730,557	+		Shewana3_3936	0.52	-0.0
4,730,558	+		Shewana3_3936	0.52	-0.2
4,730,558	+		Shewana3_3936	0.52	+0.3
4,730,558	+		Shewana3_3936	0.52	-0.4
4,730,566	-		Shewana3_3936	0.52	+1.4
4,730,575	+		Shewana3_3936	0.53	+1.0
4,730,575	+		Shewana3_3936	0.53	+0.7
4,730,575	+		Shewana3_3936	0.53	-0.2
4,730,583	-		Shewana3_3936	0.53	+0.4
4,730,583	-		Shewana3_3936	0.53	+0.4
4,730,595	-		Shewana3_3936	0.54	-1.2
4,730,601	-		Shewana3_3936	0.54	-0.6
4,730,601	-		Shewana3_3936	0.54	+0.2
4,730,629	+		Shewana3_3936	0.56	-0.2
4,730,649	+		Shewana3_3936	0.57	+0.5
4,730,649	+		Shewana3_3936	0.57	+4.2
4,730,649	+		Shewana3_3936	0.57	-0.9
4,730,657	-		Shewana3_3936	0.57	+0.2
4,730,668	+		Shewana3_3936	0.58	+0.7
4,730,668	+		Shewana3_3936	0.58	+0.7
4,730,672	+		Shewana3_3936	0.58	-0.2
4,730,676	-		Shewana3_3936	0.58	+1.4
4,730,681	-		Shewana3_3936	0.58	+0.4
4,730,684	+		Shewana3_3936	0.58	-0.3
4,730,718	+		Shewana3_3936	0.60	+0.3
4,730,718	+		Shewana3_3936	0.60	+0.4
4,730,718	+		Shewana3_3936	0.60	+3.7
4,730,726	-		Shewana3_3936	0.61	+1.4
4,730,726	-		Shewana3_3936	0.61	+1.4
4,730,733	+		Shewana3_3936	0.61	+0.6
4,730,735	+		Shewana3_3936	0.61	-0.4
4,730,761	-		Shewana3_3936	0.63	-0.1
4,730,763	-		Shewana3_3936	0.63	+0.6
4,730,771	+		Shewana3_3936	0.63	+0.2
4,730,771	+		Shewana3_3936	0.63	+0.7
4,730,771	+		Shewana3_3936	0.63	+0.1
4,730,779	-		Shewana3_3936	0.64	+1.4
4,730,779	-		Shewana3_3936	0.64	+0.1
4,730,779	-		Shewana3_3936	0.64	-0.3
4,730,779	-		Shewana3_3936	0.64	+1.4
4,730,867	+		Shewana3_3936	0.68	-0.2
4,730,867	+		Shewana3_3936	0.68	-0.1
4,730,890	+		Shewana3_3936	0.69	+0.3
4,730,890	+		Shewana3_3936	0.69	+0.7
4,730,898	-		Shewana3_3936	0.70	+0.4
4,730,900	+		Shewana3_3936	0.70	+0.6
4,730,900	+		Shewana3_3936	0.70	-0.1
4,730,908	-		Shewana3_3936	0.70	+0.5
4,730,911	-		Shewana3_3936	0.71	+1.4
4,730,923	+		Shewana3_3936	0.71	-1.3
4,730,926	-		Shewana3_3936	0.71	+3.3
4,730,971	-		Shewana3_3936	0.74	+1.4
4,730,993	+		Shewana3_3936	0.75	-0.1
4,731,021	+		Shewana3_3936	0.76	+0.4
4,731,024	-		Shewana3_3936	0.77	-0.9
4,731,024	-		Shewana3_3936	0.77	+1.4
4,731,028	+		Shewana3_3936	0.77	-0.3
4,731,028	+		Shewana3_3936	0.77	+0.7
4,731,029	-		Shewana3_3936	0.77	+0.1
4,731,029	-		Shewana3_3936	0.77	+0.8
4,731,029	-		Shewana3_3936	0.77	-0.6
4,731,036	+		Shewana3_3936	0.77	+0.3
4,731,036	+		Shewana3_3936	0.77	-0.1
4,731,036	+		Shewana3_3936	0.77	-0.6
4,731,036	+		Shewana3_3936	0.77	-0.0
4,731,036	+		Shewana3_3936	0.77	+0.1
4,731,036	+		Shewana3_3936	0.77	-1.2
4,731,036	-		Shewana3_3936	0.77	+1.1
4,731,041	+		Shewana3_3936	0.77	-0.3
4,731,044	-		Shewana3_3936	0.78	-0.7
4,731,044	-		Shewana3_3936	0.78	-0.4
4,731,044	-		Shewana3_3936	0.78	+1.0
4,731,044	-		Shewana3_3936	0.78	-0.2
4,731,044	-		Shewana3_3936	0.78	-1.2
4,731,061	+		Shewana3_3936	0.79	+1.0
4,731,069	-		Shewana3_3936	0.79	+0.4
4,731,069	-		Shewana3_3936	0.79	-0.3
4,731,069	-		Shewana3_3936	0.79	+1.4
4,731,069	-		Shewana3_3936	0.79	+0.3
4,731,069	-		Shewana3_3936	0.79	+0.4
4,731,069	-		Shewana3_3936	0.79	+0.3
4,731,069	-		Shewana3_3936	0.79	-0.9
4,731,069	-		Shewana3_3936	0.79	-0.7
4,731,129	+		Shewana3_3936	0.82	+0.3
4,731,129	+		Shewana3_3936	0.82	+0.3
4,731,129	+		Shewana3_3936	0.82	-0.8
4,731,129	+		Shewana3_3936	0.82	+0.5
4,731,129	+		Shewana3_3936	0.82	-0.1
4,731,129	+		Shewana3_3936	0.82	-0.2
4,731,129	+		Shewana3_3936	0.82	+0.4
4,731,129	+		Shewana3_3936	0.82	+0.4
4,731,129	+		Shewana3_3936	0.82	+3.2
4,731,130	+		Shewana3_3936	0.82	+1.3
4,731,137	-		Shewana3_3936	0.83	+0.5
4,731,137	-		Shewana3_3936	0.83	-0.2
4,731,137	-		Shewana3_3936	0.83	-1.2
4,731,137	-		Shewana3_3936	0.83	-0.4
4,731,137	-		Shewana3_3936	0.83	+0.1
4,731,137	-		Shewana3_3936	0.83	+0.8
4,731,137	-		Shewana3_3936	0.83	-0.5
4,731,140	+		Shewana3_3936	0.83	-0.8
4,731,140	+		Shewana3_3936	0.83	+2.0
4,731,152	+		Shewana3_3936	0.83	+0.6
4,731,152	+		Shewana3_3936	0.83	+0.6
4,731,166	+		Shewana3_3936	0.84	-0.4
4,731,166	+		Shewana3_3936	0.84	+0.4
4,731,166	+		Shewana3_3936	0.84	-0.0
4,731,166	+		Shewana3_3936	0.84	-0.6
4,731,166	+		Shewana3_3936	0.84	-0.2
4,731,179	+		Shewana3_3936	0.85	-0.0
4,731,182	-		Shewana3_3936	0.85	+0.3
4,731,187	+		Shewana3_3936	0.85	+0.8
4,731,187	+		Shewana3_3936	0.85	-0.2
4,731,187	+		Shewana3_3936	0.85	-0.5
4,731,187	-		Shewana3_3936	0.85	-0.9
4,731,195	-		Shewana3_3936	0.86	-0.3
4,731,210	-		Shewana3_3936	0.86	-1.2
4,731,222	+		Shewana3_3936	0.87	+1.1
4,731,225	+		Shewana3_3936	0.87	+0.2
4,731,233	-		Shewana3_3936	0.88	-0.8
4,731,249	+		Shewana3_3936	0.88	-0.6
4,731,257	+		Shewana3_3936	0.89	-0.1
4,731,265	-		Shewana3_3936	0.89	-0.6
4,731,267	-		Shewana3_3936	0.89	-1.4
4,731,291	+				-0.5
4,731,291	+				-0.3
4,731,291	+				-0.4
4,731,291	+				+0.9
4,731,292	+				-0.2
4,731,300	+				-4.6
4,731,300	-				+0.5
4,731,300	-				-1.3
4,731,300	-				-0.5
4,731,300	-				+0.2
4,731,300	-				-0.3
4,731,319	-				+0.6
4,731,369	+				+0.1
4,731,377	-				-0.8
4,731,465	+				-0.1
4,731,466	+				+0.1
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4,732,215	-		Shewana3_3937	0.17	-0.0
4,732,460	+		Shewana3_3937	0.61	-0.1