Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3902 and Shewana3_3903 are separated by 60 nucleotides Shewana3_3903 and Shewana3_3904 are separated by 12 nucleotides Shewana3_3904 and argC are separated by 31 nucleotides
Shewana3_3902: Shewana3_3902 - argininosuccinate synthase (RefSeq), at 4,682,547 to 4,683,770
_3902
Shewana3_3903: Shewana3_3903 - ornithine carbamoyltransferase (RefSeq), at 4,683,831 to 4,684,736
_3903
Shewana3_3904: Shewana3_3904 - acetylglutamate kinase (RefSeq), at 4,684,749 to 4,685,531
_3904
Shewana3_3905: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 4,685,563 to 4,686,543
argC
Position (kb) 4683
4684
4685 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4682.990 kb on + strand, within Shewana3_3902 at 4683.066 kb on + strand, within Shewana3_3902 at 4683.079 kb on - strand, within Shewana3_3902 at 4683.143 kb on - strand, within Shewana3_3902 at 4683.273 kb on - strand, within Shewana3_3902 at 4683.394 kb on + strand, within Shewana3_3902 at 4683.404 kb on + strand, within Shewana3_3902 at 4683.534 kb on - strand, within Shewana3_3902 at 4683.624 kb on + strand, within Shewana3_3902 at 4683.846 kb on + strand at 4683.969 kb on - strand, within Shewana3_3903 at 4684.124 kb on + strand, within Shewana3_3903 at 4684.180 kb on - strand, within Shewana3_3903 at 4684.209 kb on - strand, within Shewana3_3903 at 4684.427 kb on - strand, within Shewana3_3903 at 4684.624 kb on - strand, within Shewana3_3903 at 4684.631 kb on + strand, within Shewana3_3903 at 4684.802 kb on + strand at 4684.846 kb on - strand, within Shewana3_3904
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 4,682,990 + Shewana3_3902 0.36 +0.2 4,683,066 + Shewana3_3902 0.42 -1.4 4,683,079 - Shewana3_3902 0.43 -0.1 4,683,143 - Shewana3_3902 0.49 -0.1 4,683,273 - Shewana3_3902 0.59 +0.1 4,683,394 + Shewana3_3902 0.69 +0.1 4,683,404 + Shewana3_3902 0.70 -2.4 4,683,534 - Shewana3_3902 0.81 -0.1 4,683,624 + Shewana3_3902 0.88 -0.4 4,683,846 + +1.4 4,683,969 - Shewana3_3903 0.15 -0.4 4,684,124 + Shewana3_3903 0.32 +0.6 4,684,180 - Shewana3_3903 0.39 -0.4 4,684,209 - Shewana3_3903 0.42 +0.1 4,684,427 - Shewana3_3903 0.66 +0.3 4,684,624 - Shewana3_3903 0.88 -0.1 4,684,631 + Shewana3_3903 0.88 +2.4 4,684,802 + +3.0 4,684,846 - Shewana3_3904 0.12 -0.1
Or see this region's nucleotide sequence