Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3901

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3900 and Shewana3_3901 are separated by 64 nucleotidesShewana3_3901 and Shewana3_3902 are separated by 92 nucleotides Shewana3_3900: Shewana3_3900 - 1A family penicillin-binding protein (RefSeq), at 4,678,503 to 4,681,022 _3900 Shewana3_3901: Shewana3_3901 - argininosuccinate lyase (RefSeq), at 4,681,087 to 4,682,454 _3901 Shewana3_3902: Shewana3_3902 - argininosuccinate synthase (RefSeq), at 4,682,547 to 4,683,770 _3902 Position (kb) 4681 4682 4683Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4680.968 kb on - strandat 4681.212 kb on + strandat 4681.234 kb on - strand, within Shewana3_3901at 4681.236 kb on + strand, within Shewana3_3901at 4681.783 kb on + strand, within Shewana3_3901at 4681.829 kb on - strand, within Shewana3_3901at 4681.920 kb on - strand, within Shewana3_3901at 4682.256 kb on + strand, within Shewana3_3901at 4682.359 kb on - strandat 4682.385 kb on + strandat 4682.412 kb on + strandat 4682.455 kb on + strandat 4682.475 kb on + strandat 4682.576 kb on - strandat 4682.761 kb on - strand, within Shewana3_3902at 4682.990 kb on + strand, within Shewana3_3902at 4683.066 kb on + strand, within Shewana3_3902at 4683.079 kb on - strand, within Shewana3_3902at 4683.143 kb on - strand, within Shewana3_3902at 4683.273 kb on - strand, within Shewana3_3902at 4683.394 kb on + strand, within Shewana3_3902at 4683.404 kb on + strand, within Shewana3_3902

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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4,680,968 - -0.4
4,681,212 + -0.4
4,681,234 - Shewana3_3901 0.11 -0.4
4,681,236 + Shewana3_3901 0.11 +0.9
4,681,783 + Shewana3_3901 0.51 -0.1
4,681,829 - Shewana3_3901 0.54 -0.3
4,681,920 - Shewana3_3901 0.61 -0.2
4,682,256 + Shewana3_3901 0.85 -0.7
4,682,359 - -0.2
4,682,385 + +0.2
4,682,412 + +0.1
4,682,455 + +1.7
4,682,475 + +0.2
4,682,576 - +3.9
4,682,761 - Shewana3_3902 0.17 +0.4
4,682,990 + Shewana3_3902 0.36 +0.2
4,683,066 + Shewana3_3902 0.42 -1.4
4,683,079 - Shewana3_3902 0.43 -0.1
4,683,143 - Shewana3_3902 0.49 -0.1
4,683,273 - Shewana3_3902 0.59 +0.1
4,683,394 + Shewana3_3902 0.69 +0.1
4,683,404 + Shewana3_3902 0.70 -2.4

Or see this region's nucleotide sequence