Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3886

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3885 and Shewana3_3886 are separated by 373 nucleotidesShewana3_3886 and Shewana3_3887 are separated by 36 nucleotidesShewana3_3887 and Shewana3_3888 overlap by 1 nucleotides Shewana3_3885: Shewana3_3885 - LysR family transcriptional regulator (RefSeq), at 4,664,825 to 4,665,697 _3885 Shewana3_3886: Shewana3_3886 - tryptophanyl-tRNA synthetase (RefSeq), at 4,666,071 to 4,667,069 _3886 Shewana3_3887: Shewana3_3887 - phosphoglycolate phosphatase (RefSeq), at 4,667,106 to 4,667,789 _3887 Shewana3_3888: Shewana3_3888 - ribulose-5-phosphate 3-epimerase (RefSeq), at 4,667,789 to 4,668,466 _3888 Position (kb) 4666 4667 4668Strain fitness (log2 ratio) -1 0 1at 4665.089 kb on + strand, within Shewana3_3885at 4665.261 kb on + strand, within Shewana3_3885at 4665.307 kb on + strand, within Shewana3_3885at 4665.419 kb on - strand, within Shewana3_3885at 4665.521 kb on + strand, within Shewana3_3885at 4665.523 kb on - strand, within Shewana3_3885at 4665.523 kb on - strand, within Shewana3_3885at 4665.739 kb on - strandat 4665.976 kb on + strandat 4665.984 kb on - strandat 4665.984 kb on - strandat 4666.042 kb on + strandat 4667.131 kb on - strandat 4667.336 kb on + strand, within Shewana3_3887at 4667.372 kb on + strand, within Shewana3_3887at 4667.464 kb on - strand, within Shewana3_3887at 4667.520 kb on - strand, within Shewana3_3887at 4667.653 kb on + strand, within Shewana3_3887at 4667.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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4,665,089 + Shewana3_3885 0.30 -0.0
4,665,261 + Shewana3_3885 0.50 +0.1
4,665,307 + Shewana3_3885 0.55 +0.0
4,665,419 - Shewana3_3885 0.68 -0.4
4,665,521 + Shewana3_3885 0.80 +0.1
4,665,523 - Shewana3_3885 0.80 +0.5
4,665,523 - Shewana3_3885 0.80 +0.4
4,665,739 - +1.6
4,665,976 + -0.0
4,665,984 - -0.0
4,665,984 - -0.1
4,666,042 + +1.2
4,667,131 - +1.5
4,667,336 + Shewana3_3887 0.34 -0.0
4,667,372 + Shewana3_3887 0.39 -0.6
4,667,464 - Shewana3_3887 0.52 -0.0
4,667,520 - Shewana3_3887 0.61 -0.0
4,667,653 + Shewana3_3887 0.80 +0.0
4,667,764 - +0.1

Or see this region's nucleotide sequence