Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3885 and Shewana3_3886 are separated by 373 nucleotides Shewana3_3886 and Shewana3_3887 are separated by 36 nucleotides Shewana3_3887 and Shewana3_3888 overlap by 1 nucleotides
Shewana3_3885: Shewana3_3885 - LysR family transcriptional regulator (RefSeq), at 4,664,825 to 4,665,697
_3885
Shewana3_3886: Shewana3_3886 - tryptophanyl-tRNA synthetase (RefSeq), at 4,666,071 to 4,667,069
_3886
Shewana3_3887: Shewana3_3887 - phosphoglycolate phosphatase (RefSeq), at 4,667,106 to 4,667,789
_3887
Shewana3_3888: Shewana3_3888 - ribulose-5-phosphate 3-epimerase (RefSeq), at 4,667,789 to 4,668,466
_3888
Position (kb)
4666
4667
4668 Strain fitness (log2 ratio)
-1
0
1 at 4665.089 kb on + strand, within Shewana3_3885 at 4665.261 kb on + strand, within Shewana3_3885 at 4665.307 kb on + strand, within Shewana3_3885 at 4665.419 kb on - strand, within Shewana3_3885 at 4665.521 kb on + strand, within Shewana3_3885 at 4665.523 kb on - strand, within Shewana3_3885 at 4665.523 kb on - strand, within Shewana3_3885 at 4665.739 kb on - strand at 4665.976 kb on + strand at 4665.984 kb on - strand at 4665.984 kb on - strand at 4666.042 kb on + strand at 4667.131 kb on - strand at 4667.336 kb on + strand, within Shewana3_3887 at 4667.372 kb on + strand, within Shewana3_3887 at 4667.464 kb on - strand, within Shewana3_3887 at 4667.520 kb on - strand, within Shewana3_3887 at 4667.653 kb on + strand, within Shewana3_3887 at 4667.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 4,665,089 + Shewana3_3885 0.30 -0.0 4,665,261 + Shewana3_3885 0.50 +0.1 4,665,307 + Shewana3_3885 0.55 +0.0 4,665,419 - Shewana3_3885 0.68 -0.4 4,665,521 + Shewana3_3885 0.80 +0.1 4,665,523 - Shewana3_3885 0.80 +0.5 4,665,523 - Shewana3_3885 0.80 +0.4 4,665,739 - +1.6 4,665,976 + -0.0 4,665,984 - -0.0 4,665,984 - -0.1 4,666,042 + +1.2 4,667,131 - +1.5 4,667,336 + Shewana3_3887 0.34 -0.0 4,667,372 + Shewana3_3887 0.39 -0.6 4,667,464 - Shewana3_3887 0.52 -0.0 4,667,520 - Shewana3_3887 0.61 -0.0 4,667,653 + Shewana3_3887 0.80 +0.0 4,667,764 - +0.1
Or see this region's nucleotide sequence