Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3630 and Shewana3_3631 are separated by 145 nucleotides Shewana3_3631 and Shewana3_3632 are separated by 175 nucleotides Shewana3_3632 and Shewana3_3633 are separated by 28 nucleotides
Shewana3_3630: Shewana3_3630 - TonB-dependent receptor (RefSeq), at 4,357,678 to 4,359,819
_3630
Shewana3_3631: Shewana3_3631 - microcin-processing peptidase 1 (RefSeq), at 4,359,965 to 4,361,308
_3631
Shewana3_3632: Shewana3_3632 - hypothetical protein (RefSeq), at 4,361,484 to 4,362,017
_3632
Shewana3_3633: Shewana3_3633 - Ig domain-containing protein (RefSeq), at 4,362,046 to 4,364,535
_3633
Position (kb)
4359
4360
4361
4362 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4359.068 kb on + strand, within Shewana3_3630 at 4359.068 kb on + strand, within Shewana3_3630 at 4359.092 kb on + strand, within Shewana3_3630 at 4359.104 kb on + strand, within Shewana3_3630 at 4359.202 kb on + strand, within Shewana3_3630 at 4359.210 kb on - strand, within Shewana3_3630 at 4359.210 kb on - strand, within Shewana3_3630 at 4359.252 kb on - strand, within Shewana3_3630 at 4359.252 kb on - strand, within Shewana3_3630 at 4359.274 kb on - strand, within Shewana3_3630 at 4359.310 kb on - strand, within Shewana3_3630 at 4359.368 kb on + strand, within Shewana3_3630 at 4359.506 kb on + strand, within Shewana3_3630 at 4359.573 kb on + strand, within Shewana3_3630 at 4359.573 kb on + strand, within Shewana3_3630 at 4359.578 kb on + strand, within Shewana3_3630 at 4359.581 kb on - strand, within Shewana3_3630 at 4359.586 kb on - strand, within Shewana3_3630 at 4359.719 kb on + strand at 4359.845 kb on + strand at 4359.850 kb on + strand at 4359.853 kb on - strand at 4359.886 kb on - strand at 4360.056 kb on - strand at 4360.202 kb on + strand, within Shewana3_3631 at 4360.202 kb on + strand, within Shewana3_3631 at 4360.214 kb on + strand, within Shewana3_3631 at 4360.221 kb on + strand, within Shewana3_3631 at 4360.241 kb on + strand, within Shewana3_3631 at 4360.276 kb on - strand, within Shewana3_3631 at 4360.381 kb on - strand, within Shewana3_3631 at 4360.552 kb on + strand, within Shewana3_3631 at 4360.555 kb on - strand, within Shewana3_3631 at 4360.574 kb on + strand, within Shewana3_3631 at 4360.574 kb on + strand, within Shewana3_3631 at 4360.602 kb on + strand, within Shewana3_3631 at 4360.620 kb on - strand, within Shewana3_3631 at 4360.696 kb on - strand, within Shewana3_3631 at 4360.864 kb on + strand, within Shewana3_3631 at 4360.970 kb on + strand, within Shewana3_3631 at 4361.418 kb on + strand at 4361.546 kb on - strand, within Shewana3_3632 at 4361.681 kb on - strand, within Shewana3_3632 at 4361.767 kb on - strand, within Shewana3_3632 at 4361.861 kb on - strand, within Shewana3_3632 at 4361.868 kb on + strand, within Shewana3_3632 at 4361.913 kb on - strand, within Shewana3_3632 at 4362.183 kb on + strand at 4362.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 4,359,068 + Shewana3_3630 0.65 -0.1 4,359,068 + Shewana3_3630 0.65 +0.0 4,359,092 + Shewana3_3630 0.66 -0.4 4,359,104 + Shewana3_3630 0.67 +0.7 4,359,202 + Shewana3_3630 0.71 -0.4 4,359,210 - Shewana3_3630 0.72 -0.3 4,359,210 - Shewana3_3630 0.72 +0.2 4,359,252 - Shewana3_3630 0.73 +0.1 4,359,252 - Shewana3_3630 0.73 +4.3 4,359,274 - Shewana3_3630 0.75 -0.0 4,359,310 - Shewana3_3630 0.76 +0.8 4,359,368 + Shewana3_3630 0.79 +0.4 4,359,506 + Shewana3_3630 0.85 -0.3 4,359,573 + Shewana3_3630 0.88 -0.1 4,359,573 + Shewana3_3630 0.88 -0.1 4,359,578 + Shewana3_3630 0.89 -0.1 4,359,581 - Shewana3_3630 0.89 -0.1 4,359,586 - Shewana3_3630 0.89 +0.5 4,359,719 + -0.2 4,359,845 + -0.4 4,359,850 + -0.0 4,359,853 - -1.3 4,359,886 - +0.7 4,360,056 - -1.9 4,360,202 + Shewana3_3631 0.18 +0.2 4,360,202 + Shewana3_3631 0.18 +2.6 4,360,214 + Shewana3_3631 0.19 -0.1 4,360,221 + Shewana3_3631 0.19 +0.3 4,360,241 + Shewana3_3631 0.21 +0.9 4,360,276 - Shewana3_3631 0.23 -0.4 4,360,381 - Shewana3_3631 0.31 +0.1 4,360,552 + Shewana3_3631 0.44 -0.2 4,360,555 - Shewana3_3631 0.44 +0.6 4,360,574 + Shewana3_3631 0.45 +0.6 4,360,574 + Shewana3_3631 0.45 +0.2 4,360,602 + Shewana3_3631 0.47 +0.2 4,360,620 - Shewana3_3631 0.49 +0.7 4,360,696 - Shewana3_3631 0.54 +1.5 4,360,864 + Shewana3_3631 0.67 -0.1 4,360,970 + Shewana3_3631 0.75 +0.1 4,361,418 + +0.3 4,361,546 - Shewana3_3632 0.12 -0.8 4,361,681 - Shewana3_3632 0.37 +0.3 4,361,767 - Shewana3_3632 0.53 +1.0 4,361,861 - Shewana3_3632 0.71 +0.7 4,361,868 + Shewana3_3632 0.72 -0.2 4,361,913 - Shewana3_3632 0.80 -0.8 4,362,183 + +0.5 4,362,291 + +0.7
Or see this region's nucleotide sequence