Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3579 and Shewana3_3580 are separated by 109 nucleotides Shewana3_3580 and Shewana3_3581 are separated by 322 nucleotides
Shewana3_3579: Shewana3_3579 - Aldose 1-epimerase (EC 5.1.3.3) (from data) , at 4,294,551 to 4,295,582
_3579
Shewana3_3580: Shewana3_3580 - hypothetical protein (RefSeq), at 4,295,692 to 4,296,096
_3580
Shewana3_3581: Shewana3_3581 - response regulator receiver protein (RefSeq), at 4,296,419 to 4,297,417
_3581
Position (kb)
4295
4296
4297 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4294.816 kb on + strand, within Shewana3_3579 at 4294.914 kb on + strand, within Shewana3_3579 at 4294.945 kb on + strand, within Shewana3_3579 at 4294.981 kb on - strand, within Shewana3_3579 at 4295.056 kb on - strand, within Shewana3_3579 at 4295.143 kb on + strand, within Shewana3_3579 at 4295.175 kb on - strand, within Shewana3_3579 at 4295.291 kb on + strand, within Shewana3_3579 at 4295.351 kb on + strand, within Shewana3_3579 at 4295.447 kb on + strand, within Shewana3_3579 at 4295.771 kb on + strand, within Shewana3_3580 at 4295.845 kb on - strand, within Shewana3_3580 at 4295.972 kb on + strand, within Shewana3_3580 at 4295.980 kb on - strand, within Shewana3_3580 at 4296.050 kb on + strand, within Shewana3_3580 at 4296.086 kb on + strand at 4296.094 kb on - strand at 4296.096 kb on - strand at 4296.245 kb on + strand at 4296.355 kb on - strand at 4296.402 kb on + strand at 4296.517 kb on - strand at 4296.666 kb on - strand, within Shewana3_3581 at 4296.812 kb on + strand, within Shewana3_3581 at 4296.956 kb on + strand, within Shewana3_3581 at 4297.006 kb on - strand, within Shewana3_3581 at 4297.037 kb on - strand, within Shewana3_3581
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 4,294,816 + Shewana3_3579 0.26 +0.1 4,294,914 + Shewana3_3579 0.35 -1.2 4,294,945 + Shewana3_3579 0.38 +0.6 4,294,981 - Shewana3_3579 0.42 +0.5 4,295,056 - Shewana3_3579 0.49 -0.8 4,295,143 + Shewana3_3579 0.57 -0.1 4,295,175 - Shewana3_3579 0.60 -1.2 4,295,291 + Shewana3_3579 0.72 +0.3 4,295,351 + Shewana3_3579 0.78 -0.4 4,295,447 + Shewana3_3579 0.87 +0.6 4,295,771 + Shewana3_3580 0.20 +2.0 4,295,845 - Shewana3_3580 0.38 +2.3 4,295,972 + Shewana3_3580 0.69 +2.9 4,295,980 - Shewana3_3580 0.71 +2.5 4,296,050 + Shewana3_3580 0.88 +2.4 4,296,086 + +3.2 4,296,094 - +2.4 4,296,096 - +2.3 4,296,245 + +2.0 4,296,355 - -0.7 4,296,402 + +0.5 4,296,517 - +0.8 4,296,666 - Shewana3_3581 0.25 -0.1 4,296,812 + Shewana3_3581 0.39 -0.5 4,296,956 + Shewana3_3581 0.54 +0.2 4,297,006 - Shewana3_3581 0.59 +0.2 4,297,037 - Shewana3_3581 0.62 +0.3
Or see this region's nucleotide sequence