Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3569 and Shewana3_3570 overlap by 4 nucleotides Shewana3_3570 and Shewana3_3571 are separated by 129 nucleotides
Shewana3_3569: Shewana3_3569 - MATE efflux family protein (RefSeq), at 4,280,766 to 4,282,124
_3569
Shewana3_3570: Shewana3_3570 - LysR family transcriptional regulator (RefSeq), at 4,282,121 to 4,283,116
_3570
Shewana3_3571: Shewana3_3571 - RND family efflux transporter MFP subunit (RefSeq), at 4,283,246 to 4,284,328
_3571
Position (kb)
4282
4283
4284 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4281.133 kb on + strand, within Shewana3_3569 at 4281.223 kb on + strand, within Shewana3_3569 at 4281.369 kb on + strand, within Shewana3_3569 at 4281.830 kb on - strand, within Shewana3_3569 at 4281.885 kb on + strand, within Shewana3_3569 at 4281.885 kb on + strand, within Shewana3_3569 at 4281.917 kb on + strand, within Shewana3_3569 at 4281.917 kb on + strand, within Shewana3_3569 at 4282.007 kb on + strand at 4282.039 kb on - strand at 4282.408 kb on + strand, within Shewana3_3570 at 4282.490 kb on - strand, within Shewana3_3570 at 4282.587 kb on + strand, within Shewana3_3570 at 4282.637 kb on + strand, within Shewana3_3570 at 4282.662 kb on - strand, within Shewana3_3570 at 4282.812 kb on - strand, within Shewana3_3570 at 4283.332 kb on - strand at 4283.337 kb on + strand at 4283.437 kb on - strand, within Shewana3_3571 at 4283.605 kb on + strand, within Shewana3_3571 at 4283.605 kb on + strand, within Shewana3_3571 at 4283.654 kb on - strand, within Shewana3_3571 at 4283.656 kb on + strand, within Shewana3_3571 at 4283.784 kb on - strand, within Shewana3_3571 at 4283.856 kb on + strand, within Shewana3_3571
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 4,281,133 + Shewana3_3569 0.27 +0.6 4,281,223 + Shewana3_3569 0.34 -1.4 4,281,369 + Shewana3_3569 0.44 +0.6 4,281,830 - Shewana3_3569 0.78 +0.9 4,281,885 + Shewana3_3569 0.82 -1.6 4,281,885 + Shewana3_3569 0.82 -1.7 4,281,917 + Shewana3_3569 0.85 +0.2 4,281,917 + Shewana3_3569 0.85 -1.6 4,282,007 + +0.2 4,282,039 - -0.4 4,282,408 + Shewana3_3570 0.29 -3.2 4,282,490 - Shewana3_3570 0.37 -2.7 4,282,587 + Shewana3_3570 0.47 -0.0 4,282,637 + Shewana3_3570 0.52 -1.3 4,282,662 - Shewana3_3570 0.54 -3.0 4,282,812 - Shewana3_3570 0.69 -3.2 4,283,332 - -1.0 4,283,337 + +1.3 4,283,437 - Shewana3_3571 0.18 -0.1 4,283,605 + Shewana3_3571 0.33 -1.1 4,283,605 + Shewana3_3571 0.33 -0.4 4,283,654 - Shewana3_3571 0.38 -0.7 4,283,656 + Shewana3_3571 0.38 -0.5 4,283,784 - Shewana3_3571 0.50 -0.3 4,283,856 + Shewana3_3571 0.56 +0.5
Or see this region's nucleotide sequence