Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3460

Experiment: Tetracycline 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.001 mg/ml
4,146,060	+				+0.1
4,146,129	+				-1.2
4,146,137	-				+1.2
4,146,188	+				-0.8
4,146,196	-				+0.4
4,146,208	-				-0.2
4,146,220	+				+2.7
4,146,248	+				+0.2
4,146,256	-				-0.4
4,146,275	+				+1.2
4,146,283	-				-0.3
4,146,283	-				-0.1
4,146,284	-				-0.1
4,146,284	-				-0.3
4,146,284	-				-0.2
4,146,290	+				-0.5
4,146,290	+				+0.7
4,146,290	+				+0.1
4,146,298	-		Shewana3_3459	0.11	-0.4
4,146,298	-		Shewana3_3459	0.11	+0.3
4,146,298	-		Shewana3_3459	0.11	+0.1
4,146,298	-		Shewana3_3459	0.11	-0.3
4,146,298	-		Shewana3_3459	0.11	-1.4
4,146,298	-		Shewana3_3459	0.11	-0.3
4,146,298	-		Shewana3_3459	0.11	-0.6
4,146,369	-		Shewana3_3459	0.22	+0.7
4,146,393	+		Shewana3_3459	0.25	-1.2
4,146,401	-		Shewana3_3459	0.26	+0.2
4,146,401	-		Shewana3_3459	0.26	+0.4
4,146,424	-		Shewana3_3459	0.30	+1.2
4,146,425	+		Shewana3_3459	0.30	+1.2
4,146,426	+		Shewana3_3459	0.30	-0.2
4,146,426	+		Shewana3_3459	0.30	+1.2
4,146,426	+		Shewana3_3459	0.30	+1.6
4,146,426	+		Shewana3_3459	0.30	-0.9
4,146,426	+		Shewana3_3459	0.30	+0.2
4,146,426	+		Shewana3_3459	0.30	+0.6
4,146,432	+		Shewana3_3459	0.31	+0.1
4,146,432	+		Shewana3_3459	0.31	+1.2
4,146,432	+		Shewana3_3459	0.31	-0.2
4,146,434	-		Shewana3_3459	0.31	+0.2
4,146,434	-		Shewana3_3459	0.31	+0.0
4,146,434	-		Shewana3_3459	0.31	+0.3
4,146,434	-		Shewana3_3459	0.31	+0.3
4,146,434	-		Shewana3_3459	0.31	+0.9
4,146,434	-		Shewana3_3459	0.31	-0.2
4,146,434	-		Shewana3_3459	0.31	-0.4
4,146,434	-		Shewana3_3459	0.31	+0.7
4,146,434	-		Shewana3_3459	0.31	+0.2
4,146,440	-		Shewana3_3459	0.32	-0.4
4,146,440	-		Shewana3_3459	0.32	+1.2
4,146,440	-		Shewana3_3459	0.32	-0.4
4,146,474	-		Shewana3_3459	0.37	+1.2
4,146,490	+		Shewana3_3459	0.40	+0.1
4,146,495	+		Shewana3_3459	0.40	+0.7
4,146,694	+		Shewana3_3459	0.70	-0.0
4,146,699	+		Shewana3_3459	0.71	-0.4
4,146,702	-		Shewana3_3459	0.71	-0.6
4,146,702	-		Shewana3_3459	0.71	+0.1
4,146,702	-		Shewana3_3459	0.71	+0.2
4,146,702	-		Shewana3_3459	0.71	-0.1
4,146,844	-				+1.4
4,146,986	+				-0.7
4,146,989	-				-0.1
4,147,055	+				+0.1
4,147,065	+				-0.1
4,147,072	+				+0.2
4,147,073	-				-0.2
4,147,140	-				-0.3
4,147,170	-				+0.9
4,147,270	-				-2.8
4,147,334	-				-0.2
4,147,427	+		Shewana3_3460	0.12	+4.0
4,147,435	-		Shewana3_3460	0.12	-0.6
4,147,437	+		Shewana3_3460	0.12	-0.2
4,147,475	+		Shewana3_3460	0.14	-0.1
4,147,485	+		Shewana3_3460	0.14	-1.4
4,147,492	-		Shewana3_3460	0.14	+0.1
4,147,493	-		Shewana3_3460	0.14	+0.0
4,147,729	-		Shewana3_3460	0.21	+0.2
4,147,921	+		Shewana3_3460	0.26	+2.2
4,147,967	+		Shewana3_3460	0.27	+0.3
4,148,358	-		Shewana3_3460	0.39	-0.5
4,148,754	-		Shewana3_3460	0.50	-0.0
4,148,771	-		Shewana3_3460	0.50	+1.6
4,148,771	-		Shewana3_3460	0.50	+0.2
4,148,799	+		Shewana3_3460	0.51	+0.2
4,148,834	+		Shewana3_3460	0.52	+0.5
4,148,875	+		Shewana3_3460	0.53	-0.9
4,148,898	-		Shewana3_3460	0.54	-0.2
4,148,977	-		Shewana3_3460	0.56	+0.5
4,149,000	+		Shewana3_3460	0.57	+0.2
4,149,037	-		Shewana3_3460	0.58	+0.3
4,149,153	+		Shewana3_3460	0.61	-0.1
4,149,161	+		Shewana3_3460	0.61	-0.9
4,149,169	-		Shewana3_3460	0.62	-0.6
4,149,270	+		Shewana3_3460	0.64	-0.7
4,149,567	+		Shewana3_3460	0.73	+0.6
4,149,569	+		Shewana3_3460	0.73	+0.2
4,149,582	-		Shewana3_3460	0.73	+0.2
4,149,770	+		Shewana3_3460	0.79	-0.4
4,149,800	-		Shewana3_3460	0.79	+0.4
4,149,979	-		Shewana3_3460	0.85	+0.7
4,149,981	+		Shewana3_3460	0.85	+0.2
4,150,079	-		Shewana3_3460	0.87	-0.1
4,150,129	-		Shewana3_3460	0.89	+1.2
4,150,280	+				+1.0
4,150,376	-				-0.0
4,150,390	-				-2.0
4,150,425	+				-0.4
4,150,434	-				-0.3
4,150,749	-				+0.4
4,150,942	-		Shewana3_3461	0.23	-0.3
4,150,944	-		Shewana3_3461	0.23	+1.1
4,150,994	+		Shewana3_3461	0.28	-0.4
4,151,077	-		Shewana3_3461	0.35	-0.7
4,151,094	+		Shewana3_3461	0.36	+0.4
4,151,094	+		Shewana3_3461	0.36	-2.7
4,151,196	-		Shewana3_3461	0.45	-2.0
4,151,234	-		Shewana3_3461	0.48	+0.5
4,151,457	+		Shewana3_3461	0.67	-0.4
4,151,457	+		Shewana3_3461	0.67	+0.8
4,151,458	-		Shewana3_3461	0.67	+0.9