Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3422 and Shewana3_3423 overlap by 4 nucleotides Shewana3_3423 and Shewana3_3424 are separated by 234 nucleotides Shewana3_3424 and Shewana3_3425 are separated by 1 nucleotides
Shewana3_3422: Shewana3_3422 - hypothetical protein (RefSeq), at 4,097,796 to 4,100,459
_3422
Shewana3_3423: Shewana3_3423 - hypothetical protein (RefSeq), at 4,100,456 to 4,101,706
_3423
Shewana3_3424: Shewana3_3424 - methylation site containing protein (RefSeq), at 4,101,941 to 4,102,312
_3424
Shewana3_3425: Shewana3_3425 - methylation site containing protein (RefSeq), at 4,102,314 to 4,102,748
_3425
Position (kb)
4100
4101
4102 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4099.610 kb on + strand, within Shewana3_3422 at 4099.875 kb on - strand, within Shewana3_3422 at 4099.981 kb on + strand, within Shewana3_3422 at 4100.015 kb on + strand, within Shewana3_3422 at 4100.022 kb on + strand, within Shewana3_3422 at 4100.023 kb on - strand, within Shewana3_3422 at 4100.070 kb on - strand, within Shewana3_3422 at 4100.103 kb on + strand, within Shewana3_3422 at 4100.118 kb on + strand, within Shewana3_3422 at 4100.175 kb on - strand, within Shewana3_3422 at 4100.205 kb on - strand at 4100.576 kb on - strand at 4100.635 kb on + strand, within Shewana3_3423 at 4100.639 kb on + strand, within Shewana3_3423 at 4100.642 kb on - strand, within Shewana3_3423 at 4100.647 kb on - strand, within Shewana3_3423 at 4100.647 kb on - strand, within Shewana3_3423 at 4100.663 kb on + strand, within Shewana3_3423 at 4100.773 kb on - strand, within Shewana3_3423 at 4100.832 kb on - strand, within Shewana3_3423 at 4100.985 kb on + strand, within Shewana3_3423 at 4101.138 kb on - strand, within Shewana3_3423 at 4101.419 kb on + strand, within Shewana3_3423 at 4101.734 kb on - strand at 4101.907 kb on + strand at 4101.960 kb on + strand at 4101.968 kb on - strand at 4102.137 kb on - strand, within Shewana3_3424 at 4102.137 kb on - strand, within Shewana3_3424 at 4102.335 kb on + strand at 4102.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 4,099,610 + Shewana3_3422 0.68 +1.5 4,099,875 - Shewana3_3422 0.78 -0.3 4,099,981 + Shewana3_3422 0.82 +0.3 4,100,015 + Shewana3_3422 0.83 +0.1 4,100,022 + Shewana3_3422 0.84 -0.1 4,100,023 - Shewana3_3422 0.84 -0.4 4,100,070 - Shewana3_3422 0.85 +0.0 4,100,103 + Shewana3_3422 0.87 -0.4 4,100,118 + Shewana3_3422 0.87 +0.1 4,100,175 - Shewana3_3422 0.89 +0.1 4,100,205 - +0.1 4,100,576 - +0.1 4,100,635 + Shewana3_3423 0.14 +0.1 4,100,639 + Shewana3_3423 0.15 +0.9 4,100,642 - Shewana3_3423 0.15 +0.7 4,100,647 - Shewana3_3423 0.15 +0.2 4,100,647 - Shewana3_3423 0.15 +0.6 4,100,663 + Shewana3_3423 0.17 -0.6 4,100,773 - Shewana3_3423 0.25 +0.2 4,100,832 - Shewana3_3423 0.30 +2.1 4,100,985 + Shewana3_3423 0.42 -1.1 4,101,138 - Shewana3_3423 0.55 -0.2 4,101,419 + Shewana3_3423 0.77 +1.1 4,101,734 - +1.1 4,101,907 + +0.1 4,101,960 + -1.5 4,101,968 - -0.3 4,102,137 - Shewana3_3424 0.53 +0.0 4,102,137 - Shewana3_3424 0.53 +3.4 4,102,335 + +0.3 4,102,345 - -0.1
Or see this region's nucleotide sequence