Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3270 and Shewana3_3271 are separated by 10 nucleotides Shewana3_3271 and Shewana3_3272 are separated by 71 nucleotides Shewana3_3272 and Shewana3_3273 are separated by 15 nucleotides
Shewana3_3270: Shewana3_3270 - GCN5-related N-acetyltransferase (RefSeq), at 3,910,772 to 3,911,167
_3270
Shewana3_3271: Shewana3_3271 - cell division protein ZipA (RefSeq), at 3,911,178 to 3,911,732
_3271
Shewana3_3272: Shewana3_3272 - periplasmic binding protein (RefSeq), at 3,911,804 to 3,912,628
_3272
Shewana3_3273: Shewana3_3273 - hypothetical protein (RefSeq), at 3,912,644 to 3,913,681
_3273
Position (kb)
3911
3912
3913 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3911.182 kb on - strand at 3911.272 kb on + strand, within Shewana3_3271 at 3911.444 kb on + strand, within Shewana3_3271 at 3911.452 kb on - strand, within Shewana3_3271 at 3911.599 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.654 kb on + strand, within Shewana3_3271 at 3911.796 kb on - strand at 3911.861 kb on - strand at 3911.949 kb on - strand, within Shewana3_3272 at 3911.973 kb on - strand, within Shewana3_3272 at 3911.973 kb on - strand, within Shewana3_3272 at 3911.975 kb on + strand, within Shewana3_3272 at 3912.093 kb on - strand, within Shewana3_3272 at 3912.129 kb on - strand, within Shewana3_3272 at 3912.129 kb on - strand, within Shewana3_3272 at 3912.134 kb on - strand, within Shewana3_3272 at 3912.229 kb on - strand, within Shewana3_3272 at 3912.676 kb on + strand at 3912.676 kb on + strand at 3913.305 kb on - strand, within Shewana3_3273 at 3913.371 kb on - strand, within Shewana3_3273 at 3913.433 kb on + strand, within Shewana3_3273 at 3913.438 kb on + strand, within Shewana3_3273
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,911,182 - +0.5 3,911,272 + Shewana3_3271 0.17 +0.3 3,911,444 + Shewana3_3271 0.48 -0.7 3,911,452 - Shewana3_3271 0.49 +0.1 3,911,599 - Shewana3_3271 0.76 +0.3 3,911,604 - Shewana3_3271 0.77 +0.5 3,911,604 - Shewana3_3271 0.77 +0.6 3,911,604 - Shewana3_3271 0.77 -0.3 3,911,604 - Shewana3_3271 0.77 +0.3 3,911,654 + Shewana3_3271 0.86 -0.0 3,911,796 - +0.4 3,911,861 - +1.1 3,911,949 - Shewana3_3272 0.18 -1.9 3,911,973 - Shewana3_3272 0.20 -3.3 3,911,973 - Shewana3_3272 0.20 -0.0 3,911,975 + Shewana3_3272 0.21 +1.1 3,912,093 - Shewana3_3272 0.35 -0.0 3,912,129 - Shewana3_3272 0.39 -0.4 3,912,129 - Shewana3_3272 0.39 -0.6 3,912,134 - Shewana3_3272 0.40 -1.5 3,912,229 - Shewana3_3272 0.52 -0.7 3,912,676 + +5.1 3,912,676 + -0.9 3,913,305 - Shewana3_3273 0.64 +1.1 3,913,371 - Shewana3_3273 0.70 +0.1 3,913,433 + Shewana3_3273 0.76 -0.5 3,913,438 + Shewana3_3273 0.76 +0.1
Or see this region's nucleotide sequence