Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3138 and Shewana3_3139 are separated by 64 nucleotides Shewana3_3139 and rpsT are separated by 83 nucleotides rpsT and Shewana3_3141 are separated by 60 nucleotides Shewana3_3141 and Shewana3_3142 are separated by 135 nucleotides
Shewana3_3138: Shewana3_3138 - integral membrane protein MviN (RefSeq), at 3,764,547 to 3,766,106
_3138
Shewana3_3139: Shewana3_3139 - hypothetical protein (RefSeq), at 3,766,171 to 3,766,275
_3139
Shewana3_3140: rpsT - 30S ribosomal protein S20 (RefSeq), at 3,766,359 to 3,766,625
rpsT
Shewana3_3141: Shewana3_3141 - ArsR family transcriptional regulator (RefSeq), at 3,766,686 to 3,766,982
_3141
Shewana3_3142: Shewana3_3142 - peptidase M28 (RefSeq), at 3,767,118 to 3,768,524
_3142
Position (kb)
3766
3767 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3766.125 kb on - strand at 3766.176 kb on - strand at 3766.854 kb on + strand, within Shewana3_3141 at 3766.932 kb on + strand, within Shewana3_3141 at 3766.954 kb on + strand at 3766.962 kb on - strand at 3767.002 kb on + strand at 3767.026 kb on - strand at 3767.043 kb on - strand at 3767.045 kb on - strand at 3767.164 kb on + strand at 3767.183 kb on - strand at 3767.183 kb on - strand at 3767.240 kb on + strand at 3767.316 kb on - strand, within Shewana3_3142 at 3767.333 kb on - strand, within Shewana3_3142 at 3767.616 kb on + strand, within Shewana3_3142 at 3767.624 kb on - strand, within Shewana3_3142
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,766,125 - -0.2 3,766,176 - +0.4 3,766,854 + Shewana3_3141 0.57 +2.0 3,766,932 + Shewana3_3141 0.83 +1.0 3,766,954 + +1.0 3,766,962 - +0.7 3,767,002 + +1.0 3,767,026 - +0.0 3,767,043 - -1.0 3,767,045 - +0.3 3,767,164 + +1.0 3,767,183 - -0.8 3,767,183 - -2.0 3,767,240 + -0.2 3,767,316 - Shewana3_3142 0.14 +2.0 3,767,333 - Shewana3_3142 0.15 +1.0 3,767,616 + Shewana3_3142 0.35 -0.1 3,767,624 - Shewana3_3142 0.36 +1.0
Or see this region's nucleotide sequence