Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3076 and Shewana3_3077 are separated by 234 nucleotides Shewana3_3077 and Shewana3_3078 are separated by 623 nucleotides
Shewana3_3076: Shewana3_3076 - metal dependent phosphohydrolase (RefSeq), at 3,689,642 to 3,690,892
_3076
Shewana3_3077: Shewana3_3077 - major outer membrane lipoprotein, putative (RefSeq), at 3,691,127 to 3,691,393
_3077
Shewana3_3078: Shewana3_3078 - ribosomal RNA large subunit methyltransferase A, putative (RefSeq), at 3,692,017 to 3,692,856
_3078
Position (kb)
3691
3692 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3690.426 kb on + strand, within Shewana3_3076 at 3691.169 kb on + strand, within Shewana3_3077 at 3691.185 kb on + strand, within Shewana3_3077 at 3691.192 kb on + strand, within Shewana3_3077 at 3691.215 kb on + strand, within Shewana3_3077 at 3691.215 kb on + strand, within Shewana3_3077 at 3691.274 kb on + strand, within Shewana3_3077 at 3691.288 kb on + strand, within Shewana3_3077 at 3691.297 kb on + strand, within Shewana3_3077 at 3691.547 kb on - strand at 3691.565 kb on + strand at 3691.573 kb on - strand at 3691.573 kb on - strand at 3691.573 kb on - strand at 3691.573 kb on - strand at 3691.583 kb on + strand at 3691.616 kb on + strand at 3691.616 kb on + strand at 3691.624 kb on - strand at 3691.647 kb on - strand at 3691.744 kb on + strand at 3692.016 kb on + strand at 3692.024 kb on - strand at 3692.081 kb on + strand at 3692.117 kb on - strand, within Shewana3_3078 at 3692.253 kb on + strand, within Shewana3_3078 at 3692.378 kb on + strand, within Shewana3_3078
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,690,426 + Shewana3_3076 0.63 -0.8 3,691,169 + Shewana3_3077 0.16 -1.3 3,691,185 + Shewana3_3077 0.22 -1.8 3,691,192 + Shewana3_3077 0.24 -1.5 3,691,215 + Shewana3_3077 0.33 -1.4 3,691,215 + Shewana3_3077 0.33 -1.9 3,691,274 + Shewana3_3077 0.55 -1.8 3,691,288 + Shewana3_3077 0.60 -2.6 3,691,297 + Shewana3_3077 0.64 -1.5 3,691,547 - +0.4 3,691,565 + +0.9 3,691,573 - +0.9 3,691,573 - +1.4 3,691,573 - +0.4 3,691,573 - -0.1 3,691,583 + +0.9 3,691,616 + +0.9 3,691,616 + +0.9 3,691,624 - +0.9 3,691,647 - +0.9 3,691,744 + -0.1 3,692,016 + +0.9 3,692,024 - -0.1 3,692,081 + -1.6 3,692,117 - Shewana3_3078 0.12 -2.3 3,692,253 + Shewana3_3078 0.28 -1.1 3,692,378 + Shewana3_3078 0.43 +2.5
Or see this region's nucleotide sequence