Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3050

Experiment: Tetracycline 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.001 mg/ml
3,653,343	-		Shewana3_3048	0.69	+0.4
3,653,414	+		Shewana3_3048	0.77	-0.1
3,653,445	-		Shewana3_3048	0.80	-1.4
3,653,542	-				+0.2
3,654,547	+				+0.2
3,654,555	-				-1.9
3,654,620	-				+1.9
3,654,782	-	gltB	Shewana3_3050	0.13	-0.5
3,654,789	-	gltB	Shewana3_3050	0.13	-0.8
3,654,998	+	gltB	Shewana3_3050	0.18	-1.1
3,655,024	+	gltB	Shewana3_3050	0.18	-0.0
3,655,100	+	gltB	Shewana3_3050	0.20	-0.3
3,655,105	+	gltB	Shewana3_3050	0.20	+0.4
3,655,105	+	gltB	Shewana3_3050	0.20	+0.1
3,655,108	-	gltB	Shewana3_3050	0.20	-0.5
3,655,113	-	gltB	Shewana3_3050	0.20	+0.9
3,655,113	-	gltB	Shewana3_3050	0.20	+0.9
3,655,181	-	gltB	Shewana3_3050	0.22	+0.8
3,655,242	+	gltB	Shewana3_3050	0.23	+1.9
3,655,411	+	gltB	Shewana3_3050	0.27	-0.1
3,655,411	+	gltB	Shewana3_3050	0.27	+0.4
3,655,419	-	gltB	Shewana3_3050	0.27	+0.9
3,655,423	+	gltB	Shewana3_3050	0.27	+1.2
3,655,431	-	gltB	Shewana3_3050	0.27	+0.2
3,655,479	+	gltB	Shewana3_3050	0.28	+0.9
3,655,518	+	gltB	Shewana3_3050	0.29	-0.2
3,655,526	-	gltB	Shewana3_3050	0.29	+1.9
3,655,541	-	gltB	Shewana3_3050	0.30	+0.1
3,655,618	+	gltB	Shewana3_3050	0.31	-0.5
3,655,618	-	gltB	Shewana3_3050	0.31	-0.0
3,655,860	-	gltB	Shewana3_3050	0.37	+0.2
3,655,880	-	gltB	Shewana3_3050	0.37	+0.4
3,655,979	+	gltB	Shewana3_3050	0.40	+2.8
3,655,979	+	gltB	Shewana3_3050	0.40	-2.3
3,656,124	-	gltB	Shewana3_3050	0.43	+0.1
3,656,159	+	gltB	Shewana3_3050	0.44	+0.3
3,656,292	-	gltB	Shewana3_3050	0.47	+0.3
3,656,297	+	gltB	Shewana3_3050	0.47	-0.0
3,656,305	-	gltB	Shewana3_3050	0.47	+0.4
3,656,480	+	gltB	Shewana3_3050	0.51	+1.4
3,656,508	-	gltB	Shewana3_3050	0.51	-0.5
3,656,547	+	gltB	Shewana3_3050	0.52	+0.3
3,656,600	+	gltB	Shewana3_3050	0.54	-0.0
3,656,608	-	gltB	Shewana3_3050	0.54	+0.9
3,656,611	-	gltB	Shewana3_3050	0.54	-1.1
3,656,746	-	gltB	Shewana3_3050	0.57	+1.4
3,656,792	+	gltB	Shewana3_3050	0.58	-0.6
3,656,797	+	gltB	Shewana3_3050	0.58	+0.6
3,656,800	-	gltB	Shewana3_3050	0.58	+1.5
3,656,907	+	gltB	Shewana3_3050	0.60	-1.5
3,657,058	-	gltB	Shewana3_3050	0.64	+0.5
3,657,132	+	gltB	Shewana3_3050	0.66	+1.9
3,657,468	-	gltB	Shewana3_3050	0.73	+0.5
3,657,480	-	gltB	Shewana3_3050	0.73	-0.1
3,657,508	+	gltB	Shewana3_3050	0.74	+0.4
3,657,671	+	gltB	Shewana3_3050	0.78	-0.1
3,657,795	+	gltB	Shewana3_3050	0.80	-0.2
3,657,803	-	gltB	Shewana3_3050	0.81	-0.3
3,657,971	+	gltB	Shewana3_3050	0.84	-1.1
3,658,024	-	gltB	Shewana3_3050	0.86	-0.0
3,658,058	+	gltB	Shewana3_3050	0.86	+0.6
3,658,066	-	gltB	Shewana3_3050	0.87	-0.5
3,658,070	+	gltB	Shewana3_3050	0.87	-0.2
3,658,144	+	gltB	Shewana3_3050	0.88	-0.1
3,658,154	+	gltB	Shewana3_3050	0.88	+0.3
3,658,154	+	gltB	Shewana3_3050	0.88	-0.0
3,658,352	-				-0.9
3,658,826	-	gltD	Shewana3_3051	0.11	+1.9
3,658,832	-	gltD	Shewana3_3051	0.11	-0.6
3,658,832	-	gltD	Shewana3_3051	0.11	-0.1
3,658,928	+	gltD	Shewana3_3051	0.18	+0.4
3,658,928	+	gltD	Shewana3_3051	0.18	+0.7
3,658,934	-	gltD	Shewana3_3051	0.19	+0.1
3,658,956	+	gltD	Shewana3_3051	0.20	-0.1
3,659,062	+	gltD	Shewana3_3051	0.28	-0.1
3,659,140	+	gltD	Shewana3_3051	0.33	+0.2
3,659,140	+	gltD	Shewana3_3051	0.33	-0.3
3,659,140	+	gltD	Shewana3_3051	0.33	+0.1
3,659,140	+	gltD	Shewana3_3051	0.33	-0.0
3,659,140	+	gltD	Shewana3_3051	0.33	+0.1
3,659,140	+	gltD	Shewana3_3051	0.33	+0.4
3,659,140	+	gltD	Shewana3_3051	0.33	-0.2
3,659,140	+	gltD	Shewana3_3051	0.33	+0.5
3,659,148	-	gltD	Shewana3_3051	0.34	-0.1
3,659,148	-	gltD	Shewana3_3051	0.34	-0.1
3,659,148	-	gltD	Shewana3_3051	0.34	+0.2
3,659,148	-	gltD	Shewana3_3051	0.34	-0.2
3,659,148	-	gltD	Shewana3_3051	0.34	+0.0
3,659,223	+	gltD	Shewana3_3051	0.39	+0.0
3,659,240	+	gltD	Shewana3_3051	0.40	+0.5
3,659,250	+	gltD	Shewana3_3051	0.41	-0.2
3,659,311	-	gltD	Shewana3_3051	0.45	-2.5
3,659,454	-	gltD	Shewana3_3051	0.56	-1.1
3,659,471	+	gltD	Shewana3_3051	0.57	-0.4
3,659,504	+	gltD	Shewana3_3051	0.59	-0.1
3,659,562	+	gltD	Shewana3_3051	0.63	-0.1
3,659,568	-	gltD	Shewana3_3051	0.64	-0.7
3,659,603	+	gltD	Shewana3_3051	0.66	+0.7
3,659,659	+	gltD	Shewana3_3051	0.70	-0.4