Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2922 and Shewana3_2923 are separated by 227 nucleotides Shewana3_2923 and Shewana3_2924 are separated by 440 nucleotides
Shewana3_2922: Shewana3_2922 - hypothetical protein (RefSeq), at 3,500,984 to 3,502,495
_2922
Shewana3_2923: Shewana3_2923 - multi anti extrusion protein MatE (RefSeq), at 3,502,723 to 3,504,075
_2923
Shewana3_2924: Shewana3_2924 - major facilitator transporter (RefSeq), at 3,504,516 to 3,506,060
_2924
Position (kb)
3502
3503
3504
3505 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3501.762 kb on - strand, within Shewana3_2922 at 3501.922 kb on - strand, within Shewana3_2922 at 3502.037 kb on + strand, within Shewana3_2922 at 3502.258 kb on - strand, within Shewana3_2922 at 3502.427 kb on - strand at 3502.476 kb on - strand at 3502.566 kb on + strand at 3502.683 kb on - strand at 3502.869 kb on + strand, within Shewana3_2923 at 3503.006 kb on - strand, within Shewana3_2923 at 3503.071 kb on + strand, within Shewana3_2923 at 3503.073 kb on + strand, within Shewana3_2923 at 3503.081 kb on - strand, within Shewana3_2923 at 3503.126 kb on - strand, within Shewana3_2923 at 3503.126 kb on - strand, within Shewana3_2923 at 3503.128 kb on + strand, within Shewana3_2923 at 3503.286 kb on - strand, within Shewana3_2923 at 3503.295 kb on - strand, within Shewana3_2923 at 3503.390 kb on + strand, within Shewana3_2923 at 3503.447 kb on + strand, within Shewana3_2923 at 3503.447 kb on + strand, within Shewana3_2923 at 3503.839 kb on + strand, within Shewana3_2923 at 3503.865 kb on - strand, within Shewana3_2923 at 3504.048 kb on - strand at 3504.053 kb on + strand at 3504.261 kb on + strand at 3504.269 kb on - strand at 3504.269 kb on - strand at 3504.402 kb on - strand at 3504.404 kb on + strand at 3504.519 kb on + strand at 3504.519 kb on + strand at 3504.520 kb on - strand at 3504.527 kb on - strand at 3504.527 kb on - strand at 3504.622 kb on + strand at 3504.655 kb on + strand at 3504.657 kb on + strand at 3504.665 kb on - strand at 3504.711 kb on + strand, within Shewana3_2924 at 3504.714 kb on - strand, within Shewana3_2924 at 3504.766 kb on + strand, within Shewana3_2924 at 3504.955 kb on + strand, within Shewana3_2924 at 3504.987 kb on + strand, within Shewana3_2924
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,501,762 - Shewana3_2922 0.51 -0.3 3,501,922 - Shewana3_2922 0.62 -1.0 3,502,037 + Shewana3_2922 0.70 +2.5 3,502,258 - Shewana3_2922 0.84 +0.0 3,502,427 - +1.0 3,502,476 - +1.3 3,502,566 + -1.9 3,502,683 - +0.4 3,502,869 + Shewana3_2923 0.11 -0.4 3,503,006 - Shewana3_2923 0.21 -0.0 3,503,071 + Shewana3_2923 0.26 -0.3 3,503,073 + Shewana3_2923 0.26 -1.4 3,503,081 - Shewana3_2923 0.26 -0.1 3,503,126 - Shewana3_2923 0.30 +0.0 3,503,126 - Shewana3_2923 0.30 +0.4 3,503,128 + Shewana3_2923 0.30 -0.6 3,503,286 - Shewana3_2923 0.42 -0.2 3,503,295 - Shewana3_2923 0.42 +0.5 3,503,390 + Shewana3_2923 0.49 +1.0 3,503,447 + Shewana3_2923 0.54 -1.0 3,503,447 + Shewana3_2923 0.54 +1.0 3,503,839 + Shewana3_2923 0.82 +1.3 3,503,865 - Shewana3_2923 0.84 +0.4 3,504,048 - +0.3 3,504,053 + -1.4 3,504,261 + +0.7 3,504,269 - +1.0 3,504,269 - +1.0 3,504,402 - -0.0 3,504,404 + +1.1 3,504,519 + +0.7 3,504,519 + -0.4 3,504,520 - +1.0 3,504,527 - -0.0 3,504,527 - +1.0 3,504,622 + -0.0 3,504,655 + +1.0 3,504,657 + +0.8 3,504,665 - +1.0 3,504,711 + Shewana3_2924 0.13 -1.4 3,504,714 - Shewana3_2924 0.13 +1.0 3,504,766 + Shewana3_2924 0.16 +1.0 3,504,955 + Shewana3_2924 0.28 +0.4 3,504,987 + Shewana3_2924 0.30 +1.0
Or see this region's nucleotide sequence