Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2865 and Shewana3_2866 are separated by 61 nucleotides Shewana3_2866 and Shewana3_2867 are separated by 140 nucleotides Shewana3_2867 and Shewana3_2868 are separated by 548 nucleotides Shewana3_2868 and Shewana3_2869 are separated by 240 nucleotides
Shewana3_2865: Shewana3_2865 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,036 to 3,425,662
_2865
Shewana3_2866: Shewana3_2866 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,724 to 3,426,392
_2866
Shewana3_2867: Shewana3_2867 - Fmu (Sun) domain-containing protein (RefSeq), at 3,426,533 to 3,427,942
_2867
Shewana3_2868: Shewana3_2868 - hypothetical protein (RefSeq), at 3,428,491 to 3,428,655
_2868
Shewana3_2869: Shewana3_2869 - hypothetical protein (RefSeq), at 3,428,896 to 3,432,021
_2869
Position (kb)
3426
3427
3428 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 3425.616 kb on - strand at 3425.916 kb on - strand, within Shewana3_2866 at 3425.926 kb on - strand, within Shewana3_2866 at 3425.974 kb on - strand, within Shewana3_2866 at 3426.236 kb on + strand, within Shewana3_2866 at 3426.286 kb on + strand, within Shewana3_2866 at 3426.346 kb on + strand at 3426.476 kb on + strand at 3426.484 kb on - strand at 3426.659 kb on - strand at 3426.743 kb on - strand, within Shewana3_2867 at 3426.969 kb on + strand, within Shewana3_2867 at 3427.233 kb on + strand, within Shewana3_2867 at 3427.233 kb on + strand, within Shewana3_2867 at 3427.328 kb on + strand, within Shewana3_2867 at 3428.547 kb on + strand, within Shewana3_2868 at 3428.612 kb on - strand, within Shewana3_2868 at 3428.727 kb on + strand at 3428.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,425,616 - +0.6 3,425,916 - Shewana3_2866 0.29 +0.6 3,425,926 - Shewana3_2866 0.30 +0.9 3,425,974 - Shewana3_2866 0.37 +0.5 3,426,236 + Shewana3_2866 0.77 +0.1 3,426,286 + Shewana3_2866 0.84 -0.3 3,426,346 + -0.3 3,426,476 + -0.5 3,426,484 - -0.4 3,426,659 - +0.3 3,426,743 - Shewana3_2867 0.15 +4.9 3,426,969 + Shewana3_2867 0.31 +0.9 3,427,233 + Shewana3_2867 0.50 +0.1 3,427,233 + Shewana3_2867 0.50 +0.7 3,427,328 + Shewana3_2867 0.56 -0.8 3,428,547 + Shewana3_2868 0.34 -0.7 3,428,612 - Shewana3_2868 0.73 +0.9 3,428,727 + -0.5 3,428,736 - +0.9
Or see this region's nucleotide sequence