Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2867

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2865 and Shewana3_2866 are separated by 61 nucleotidesShewana3_2866 and Shewana3_2867 are separated by 140 nucleotidesShewana3_2867 and Shewana3_2868 are separated by 548 nucleotidesShewana3_2868 and Shewana3_2869 are separated by 240 nucleotides Shewana3_2865: Shewana3_2865 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,036 to 3,425,662 _2865 Shewana3_2866: Shewana3_2866 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,724 to 3,426,392 _2866 Shewana3_2867: Shewana3_2867 - Fmu (Sun) domain-containing protein (RefSeq), at 3,426,533 to 3,427,942 _2867 Shewana3_2868: Shewana3_2868 - hypothetical protein (RefSeq), at 3,428,491 to 3,428,655 _2868 Shewana3_2869: Shewana3_2869 - hypothetical protein (RefSeq), at 3,428,896 to 3,432,021 _2869 Position (kb) 3426 3427 3428Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3425.616 kb on - strandat 3425.916 kb on - strand, within Shewana3_2866at 3425.926 kb on - strand, within Shewana3_2866at 3425.974 kb on - strand, within Shewana3_2866at 3426.236 kb on + strand, within Shewana3_2866at 3426.286 kb on + strand, within Shewana3_2866at 3426.346 kb on + strandat 3426.476 kb on + strandat 3426.484 kb on - strandat 3426.659 kb on - strandat 3426.743 kb on - strand, within Shewana3_2867at 3426.969 kb on + strand, within Shewana3_2867at 3427.233 kb on + strand, within Shewana3_2867at 3427.233 kb on + strand, within Shewana3_2867at 3427.328 kb on + strand, within Shewana3_2867at 3428.547 kb on + strand, within Shewana3_2868at 3428.612 kb on - strand, within Shewana3_2868at 3428.727 kb on + strandat 3428.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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3,425,616 - +0.6
3,425,916 - Shewana3_2866 0.29 +0.6
3,425,926 - Shewana3_2866 0.30 +0.9
3,425,974 - Shewana3_2866 0.37 +0.5
3,426,236 + Shewana3_2866 0.77 +0.1
3,426,286 + Shewana3_2866 0.84 -0.3
3,426,346 + -0.3
3,426,476 + -0.5
3,426,484 - -0.4
3,426,659 - +0.3
3,426,743 - Shewana3_2867 0.15 +4.9
3,426,969 + Shewana3_2867 0.31 +0.9
3,427,233 + Shewana3_2867 0.50 +0.1
3,427,233 + Shewana3_2867 0.50 +0.7
3,427,328 + Shewana3_2867 0.56 -0.8
3,428,547 + Shewana3_2868 0.34 -0.7
3,428,612 - Shewana3_2868 0.73 +0.9
3,428,727 + -0.5
3,428,736 - +0.9

Or see this region's nucleotide sequence