Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2848 and Shewana3_2849 are separated by 85 nucleotides Shewana3_2849 and Shewana3_2850 are separated by 253 nucleotides
Shewana3_2848: Shewana3_2848 - hypothetical protein (RefSeq), at 3,408,620 to 3,410,317
_2848
Shewana3_2849: Shewana3_2849 - sigma-54 dependent trancsriptional regulator (RefSeq), at 3,410,403 to 3,411,812
_2849
Shewana3_2850: Shewana3_2850 - hypothetical protein (RefSeq), at 3,412,066 to 3,412,542
_2850
Position (kb)
3410
3411
3412 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3409.662 kb on - strand, within Shewana3_2848 at 3409.714 kb on - strand, within Shewana3_2848 at 3409.923 kb on + strand, within Shewana3_2848 at 3409.931 kb on - strand, within Shewana3_2848 at 3409.946 kb on + strand, within Shewana3_2848 at 3409.954 kb on - strand, within Shewana3_2848 at 3410.139 kb on + strand, within Shewana3_2848 at 3411.010 kb on - strand, within Shewana3_2849 at 3411.027 kb on - strand, within Shewana3_2849 at 3411.182 kb on - strand, within Shewana3_2849 at 3411.284 kb on - strand, within Shewana3_2849 at 3411.357 kb on - strand, within Shewana3_2849 at 3411.474 kb on + strand, within Shewana3_2849 at 3411.687 kb on - strand at 3411.750 kb on - strand at 3411.760 kb on - strand at 3411.824 kb on - strand at 3411.851 kb on - strand at 3412.049 kb on - strand at 3412.395 kb on - strand, within Shewana3_2850 at 3412.423 kb on - strand, within Shewana3_2850 at 3412.459 kb on + strand, within Shewana3_2850 at 3412.514 kb on + strand at 3412.514 kb on + strand at 3412.514 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,409,662 - Shewana3_2848 0.61 +0.8 3,409,714 - Shewana3_2848 0.64 -0.1 3,409,923 + Shewana3_2848 0.77 +0.9 3,409,931 - Shewana3_2848 0.77 +1.5 3,409,946 + Shewana3_2848 0.78 +0.9 3,409,954 - Shewana3_2848 0.79 -0.2 3,410,139 + Shewana3_2848 0.89 +0.9 3,411,010 - Shewana3_2849 0.43 +1.3 3,411,027 - Shewana3_2849 0.44 +0.6 3,411,182 - Shewana3_2849 0.55 -0.9 3,411,284 - Shewana3_2849 0.62 +0.2 3,411,357 - Shewana3_2849 0.68 +0.9 3,411,474 + Shewana3_2849 0.76 +0.9 3,411,687 - -0.1 3,411,750 - +0.9 3,411,760 - +0.9 3,411,824 - +0.2 3,411,851 - +0.5 3,412,049 - +0.8 3,412,395 - Shewana3_2850 0.69 -0.7 3,412,423 - Shewana3_2850 0.75 +0.9 3,412,459 + Shewana3_2850 0.82 -0.6 3,412,514 + +4.1 3,412,514 + -0.1 3,412,514 + +0.4
Or see this region's nucleotide sequence