Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2782 and Shewana3_2783 overlap by 1 nucleotides Shewana3_2783 and Shewana3_2784 are separated by 73 nucleotides Shewana3_2784 and Shewana3_2785 are separated by 93 nucleotides
Shewana3_2782: Shewana3_2782 - UDP-glucose pyrophosphorylase (RefSeq), at 3,321,505 to 3,322,413
_2782
Shewana3_2783: Shewana3_2783 - UDP-galactose 4-epimerase (RefSeq), at 3,322,413 to 3,323,426
_2783
Shewana3_2784: Shewana3_2784 - ferredoxin-type protein NapF (RefSeq), at 3,323,500 to 3,323,985
_2784
Shewana3_2785: Shewana3_2785 - hypothetical protein (RefSeq), at 3,324,079 to 3,324,522
_2785
Position (kb)
3322
3323
3324 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3321.456 kb on + strand at 3321.808 kb on + strand, within Shewana3_2782 at 3321.838 kb on + strand, within Shewana3_2782 at 3321.838 kb on + strand, within Shewana3_2782 at 3321.897 kb on + strand, within Shewana3_2782 at 3322.002 kb on + strand, within Shewana3_2782 at 3322.284 kb on + strand, within Shewana3_2782 at 3322.284 kb on + strand, within Shewana3_2782 at 3322.323 kb on - strand at 3322.332 kb on + strand at 3322.658 kb on + strand, within Shewana3_2783 at 3322.791 kb on + strand, within Shewana3_2783 at 3323.199 kb on + strand, within Shewana3_2783 at 3323.248 kb on + strand, within Shewana3_2783 at 3323.525 kb on + strand at 3323.533 kb on + strand at 3323.727 kb on + strand, within Shewana3_2784 at 3323.735 kb on - strand, within Shewana3_2784 at 3324.007 kb on - strand at 3324.019 kb on + strand at 3324.031 kb on + strand at 3324.106 kb on - strand at 3324.129 kb on - strand, within Shewana3_2785 at 3324.214 kb on - strand, within Shewana3_2785 at 3324.214 kb on - strand, within Shewana3_2785 at 3324.330 kb on + strand, within Shewana3_2785 at 3324.408 kb on + strand, within Shewana3_2785
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,321,456 + +1.5 3,321,808 + Shewana3_2782 0.33 +3.4 3,321,838 + Shewana3_2782 0.37 +3.5 3,321,838 + Shewana3_2782 0.37 +3.1 3,321,897 + Shewana3_2782 0.43 +2.8 3,322,002 + Shewana3_2782 0.55 +3.0 3,322,284 + Shewana3_2782 0.86 +2.7 3,322,284 + Shewana3_2782 0.86 +2.2 3,322,323 - +0.9 3,322,332 + +2.4 3,322,658 + Shewana3_2783 0.24 -0.6 3,322,791 + Shewana3_2783 0.37 -1.0 3,323,199 + Shewana3_2783 0.78 -1.4 3,323,248 + Shewana3_2783 0.82 -0.3 3,323,525 + +0.4 3,323,533 + -0.5 3,323,727 + Shewana3_2784 0.47 +0.9 3,323,735 - Shewana3_2784 0.48 +1.9 3,324,007 - +1.9 3,324,019 + +0.9 3,324,031 + +0.9 3,324,106 - -0.7 3,324,129 - Shewana3_2785 0.11 +0.9 3,324,214 - Shewana3_2785 0.30 -1.1 3,324,214 - Shewana3_2785 0.30 +0.8 3,324,330 + Shewana3_2785 0.57 +0.3 3,324,408 + Shewana3_2785 0.74 +0.7
Or see this region's nucleotide sequence