Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2678 and Shewana3_2679 are separated by 225 nucleotides Shewana3_2679 and Shewana3_2680 overlap by 1 nucleotides Shewana3_2680 and Shewana3_2681 are separated by 127 nucleotides
Shewana3_2678: Shewana3_2678 - outer membrane protein precursor MtrB (RefSeq), at 3,201,158 to 3,203,245
_2678
Shewana3_2679: Shewana3_2679 - hypothetical protein (RefSeq), at 3,203,471 to 3,204,085
_2679
Shewana3_2680: Shewana3_2680 - phage SPO1 DNA polymerase domain-containing protein (RefSeq), at 3,204,085 to 3,204,798
_2680
Shewana3_2681: Shewana3_2681 - vibriolysin (RefSeq), at 3,204,926 to 3,206,428
_2681
Position (kb)
3203
3204
3205 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3202.571 kb on - strand, within Shewana3_2678 at 3202.998 kb on - strand, within Shewana3_2678 at 3203.119 kb on + strand at 3203.172 kb on + strand at 3203.179 kb on - strand at 3203.205 kb on - strand at 3203.214 kb on + strand at 3203.239 kb on + strand at 3203.613 kb on - strand, within Shewana3_2679 at 3203.613 kb on - strand, within Shewana3_2679 at 3203.633 kb on + strand, within Shewana3_2679 at 3203.717 kb on + strand, within Shewana3_2679 at 3203.801 kb on + strand, within Shewana3_2679 at 3203.912 kb on + strand, within Shewana3_2679 at 3204.166 kb on + strand, within Shewana3_2680 at 3204.182 kb on - strand, within Shewana3_2680 at 3204.401 kb on + strand, within Shewana3_2680 at 3204.409 kb on - strand, within Shewana3_2680 at 3204.555 kb on + strand, within Shewana3_2680 at 3204.555 kb on + strand, within Shewana3_2680 at 3204.555 kb on + strand, within Shewana3_2680 at 3204.563 kb on - strand, within Shewana3_2680 at 3204.664 kb on - strand, within Shewana3_2680 at 3204.688 kb on - strand, within Shewana3_2680 at 3204.738 kb on + strand at 3204.812 kb on - strand at 3204.875 kb on + strand at 3204.897 kb on - strand at 3204.983 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,202,571 - Shewana3_2678 0.68 +0.2 3,202,998 - Shewana3_2678 0.88 +0.8 3,203,119 + -2.4 3,203,172 + -0.1 3,203,179 - +0.8 3,203,205 - +0.2 3,203,214 + -0.4 3,203,239 + +0.6 3,203,613 - Shewana3_2679 0.23 +2.5 3,203,613 - Shewana3_2679 0.23 +0.3 3,203,633 + Shewana3_2679 0.26 +0.4 3,203,717 + Shewana3_2679 0.40 -0.7 3,203,801 + Shewana3_2679 0.54 +2.8 3,203,912 + Shewana3_2679 0.72 +0.8 3,204,166 + Shewana3_2680 0.11 +0.8 3,204,182 - Shewana3_2680 0.14 -0.6 3,204,401 + Shewana3_2680 0.44 +0.2 3,204,409 - Shewana3_2680 0.45 +0.2 3,204,555 + Shewana3_2680 0.66 +0.8 3,204,555 + Shewana3_2680 0.66 +0.8 3,204,555 + Shewana3_2680 0.66 +0.8 3,204,563 - Shewana3_2680 0.67 -0.2 3,204,664 - Shewana3_2680 0.81 -0.0 3,204,688 - Shewana3_2680 0.84 -1.2 3,204,738 + +0.2 3,204,812 - +0.4 3,204,875 + +0.8 3,204,897 - -0.7 3,204,983 + -2.1
Or see this region's nucleotide sequence