Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2677 and Shewana3_2678 are separated by 12 nucleotides Shewana3_2678 and Shewana3_2679 are separated by 225 nucleotides Shewana3_2679 and Shewana3_2680 overlap by 1 nucleotides
Shewana3_2677: Shewana3_2677 - cytochrome C family protein (RefSeq), at 3,200,156 to 3,201,145
_2677
Shewana3_2678: Shewana3_2678 - outer membrane protein precursor MtrB (RefSeq), at 3,201,158 to 3,203,245
_2678
Shewana3_2679: Shewana3_2679 - hypothetical protein (RefSeq), at 3,203,471 to 3,204,085
_2679
Shewana3_2680: Shewana3_2680 - phage SPO1 DNA polymerase domain-containing protein (RefSeq), at 3,204,085 to 3,204,798
_2680
Position (kb)
3201
3202
3203
3204 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3200.161 kb on - strand at 3200.288 kb on + strand, within Shewana3_2677 at 3200.383 kb on + strand, within Shewana3_2677 at 3200.391 kb on - strand, within Shewana3_2677 at 3200.411 kb on - strand, within Shewana3_2677 at 3200.459 kb on + strand, within Shewana3_2677 at 3200.473 kb on - strand, within Shewana3_2677 at 3200.605 kb on - strand, within Shewana3_2677 at 3200.699 kb on - strand, within Shewana3_2677 at 3200.767 kb on - strand, within Shewana3_2677 at 3200.810 kb on + strand, within Shewana3_2677 at 3200.876 kb on - strand, within Shewana3_2677 at 3200.917 kb on + strand, within Shewana3_2677 at 3200.951 kb on + strand, within Shewana3_2677 at 3201.032 kb on + strand, within Shewana3_2677 at 3201.147 kb on - strand at 3201.304 kb on - strand at 3201.338 kb on - strand at 3201.494 kb on - strand, within Shewana3_2678 at 3201.507 kb on + strand, within Shewana3_2678 at 3201.632 kb on - strand, within Shewana3_2678 at 3201.738 kb on - strand, within Shewana3_2678 at 3202.051 kb on + strand, within Shewana3_2678 at 3202.330 kb on - strand, within Shewana3_2678 at 3202.425 kb on - strand, within Shewana3_2678 at 3202.571 kb on - strand, within Shewana3_2678 at 3202.998 kb on - strand, within Shewana3_2678 at 3203.119 kb on + strand at 3203.172 kb on + strand at 3203.179 kb on - strand at 3203.205 kb on - strand at 3203.214 kb on + strand at 3203.239 kb on + strand at 3203.613 kb on - strand, within Shewana3_2679 at 3203.613 kb on - strand, within Shewana3_2679 at 3203.633 kb on + strand, within Shewana3_2679 at 3203.717 kb on + strand, within Shewana3_2679 at 3203.801 kb on + strand, within Shewana3_2679 at 3203.912 kb on + strand, within Shewana3_2679 at 3204.166 kb on + strand, within Shewana3_2680 at 3204.182 kb on - strand, within Shewana3_2680
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 3,200,161 - -0.3 3,200,288 + Shewana3_2677 0.13 -0.1 3,200,383 + Shewana3_2677 0.23 -1.2 3,200,391 - Shewana3_2677 0.24 -1.2 3,200,411 - Shewana3_2677 0.26 +0.5 3,200,459 + Shewana3_2677 0.31 -1.0 3,200,473 - Shewana3_2677 0.32 +1.8 3,200,605 - Shewana3_2677 0.45 +1.1 3,200,699 - Shewana3_2677 0.55 -0.2 3,200,767 - Shewana3_2677 0.62 +0.8 3,200,810 + Shewana3_2677 0.66 -1.4 3,200,876 - Shewana3_2677 0.73 -0.6 3,200,917 + Shewana3_2677 0.77 +2.4 3,200,951 + Shewana3_2677 0.80 +0.8 3,201,032 + Shewana3_2677 0.88 -0.3 3,201,147 - -0.2 3,201,304 - +0.8 3,201,338 - -2.0 3,201,494 - Shewana3_2678 0.16 +0.8 3,201,507 + Shewana3_2678 0.17 +1.2 3,201,632 - Shewana3_2678 0.23 +1.6 3,201,738 - Shewana3_2678 0.28 +0.3 3,202,051 + Shewana3_2678 0.43 +0.1 3,202,330 - Shewana3_2678 0.56 -0.5 3,202,425 - Shewana3_2678 0.61 +1.8 3,202,571 - Shewana3_2678 0.68 +0.2 3,202,998 - Shewana3_2678 0.88 +0.8 3,203,119 + -2.4 3,203,172 + -0.1 3,203,179 - +0.8 3,203,205 - +0.2 3,203,214 + -0.4 3,203,239 + +0.6 3,203,613 - Shewana3_2679 0.23 +2.5 3,203,613 - Shewana3_2679 0.23 +0.3 3,203,633 + Shewana3_2679 0.26 +0.4 3,203,717 + Shewana3_2679 0.40 -0.7 3,203,801 + Shewana3_2679 0.54 +2.8 3,203,912 + Shewana3_2679 0.72 +0.8 3,204,166 + Shewana3_2680 0.11 +0.8 3,204,182 - Shewana3_2680 0.14 -0.6
Or see this region's nucleotide sequence