Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2357 and Shewana3_2358 are separated by 155 nucleotides Shewana3_2358 and Shewana3_2359 are separated by 78 nucleotides Shewana3_2359 and Shewana3_2360 are separated by 77 nucleotides Shewana3_2360 and Shewana3_2361 overlap by 13 nucleotides Shewana3_2361 and Shewana3_2362 are separated by 223 nucleotides
Shewana3_2357: Shewana3_2357 - hypothetical protein (RefSeq), at 2,837,073 to 2,837,285
_2357
Shewana3_2358: Shewana3_2358 - hypothetical protein (RefSeq), at 2,837,441 to 2,837,677
_2358
Shewana3_2359: Shewana3_2359 - transposase IS3/IS911 family protein (RefSeq), at 2,837,756 to 2,838,001
_2359
Shewana3_2360: Shewana3_2360 - IS3 family transposase (RefSeq), at 2,838,079 to 2,838,426
_2360
Shewana3_2361: Shewana3_2361 - integrase catalytic subunit (RefSeq), at 2,838,414 to 2,838,917
_2361
Shewana3_2362: Shewana3_2362 - NnrS family protein (RefSeq), at 2,839,141 to 2,840,352
_2362
Position (kb)
2838
2839 Strain fitness (log2 ratio)
-1
0
1
2 at 2837.134 kb on - strand, within Shewana3_2357 at 2837.207 kb on + strand, within Shewana3_2357 at 2837.259 kb on + strand, within Shewana3_2357 at 2837.754 kb on - strand at 2837.874 kb on + strand, within Shewana3_2359 at 2837.936 kb on - strand, within Shewana3_2359 at 2838.104 kb on + strand at 2838.429 kb on + strand at 2838.588 kb on + strand, within Shewana3_2361 at 2838.664 kb on + strand, within Shewana3_2361 at 2838.902 kb on - strand at 2838.932 kb on + strand at 2839.044 kb on + strand at 2839.344 kb on - strand, within Shewana3_2362
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 2,837,134 - Shewana3_2357 0.29 +0.4 2,837,207 + Shewana3_2357 0.63 +0.7 2,837,259 + Shewana3_2357 0.87 +0.7 2,837,754 - +2.4 2,837,874 + Shewana3_2359 0.48 +0.7 2,837,936 - Shewana3_2359 0.73 +1.7 2,838,104 + -0.3 2,838,429 + -0.1 2,838,588 + Shewana3_2361 0.35 +0.7 2,838,664 + Shewana3_2361 0.50 -0.3 2,838,902 - +0.7 2,838,932 + -0.3 2,839,044 + +1.7 2,839,344 - Shewana3_2362 0.17 +0.7
Or see this region's nucleotide sequence