Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2327 and Shewana3_2328 are separated by 309 nucleotides Shewana3_2328 and Shewana3_2329 are separated by 132 nucleotides
Shewana3_2327: Shewana3_2327 - transcriptional regulator (RefSeq), at 2,803,958 to 2,804,908
_2327
Shewana3_2328: Shewana3_2328 - hypothetical protein (RefSeq), at 2,805,218 to 2,805,493
_2328
Shewana3_2329: Shewana3_2329 - major facilitator transporter (RefSeq), at 2,805,626 to 2,806,864
_2329
Position (kb)
2805
2806 Strain fitness (log2 ratio)
-1
0
1 at 2804.295 kb on + strand, within Shewana3_2327 at 2804.449 kb on - strand, within Shewana3_2327 at 2804.571 kb on - strand, within Shewana3_2327 at 2804.601 kb on - strand, within Shewana3_2327 at 2804.601 kb on - strand, within Shewana3_2327 at 2804.602 kb on - strand, within Shewana3_2327 at 2804.778 kb on + strand, within Shewana3_2327 at 2805.300 kb on - strand, within Shewana3_2328 at 2805.305 kb on - strand, within Shewana3_2328 at 2805.549 kb on - strand at 2805.742 kb on + strand at 2805.750 kb on - strand, within Shewana3_2329 at 2805.888 kb on - strand, within Shewana3_2329 at 2805.924 kb on + strand, within Shewana3_2329 at 2805.989 kb on - strand, within Shewana3_2329 at 2806.046 kb on + strand, within Shewana3_2329 at 2806.054 kb on - strand, within Shewana3_2329 at 2806.054 kb on - strand, within Shewana3_2329 at 2806.054 kb on - strand, within Shewana3_2329 at 2806.066 kb on + strand, within Shewana3_2329 at 2806.439 kb on + strand, within Shewana3_2329
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 2,804,295 + Shewana3_2327 0.35 -0.3 2,804,449 - Shewana3_2327 0.52 +0.7 2,804,571 - Shewana3_2327 0.64 +0.7 2,804,601 - Shewana3_2327 0.68 +0.7 2,804,601 - Shewana3_2327 0.68 +0.7 2,804,602 - Shewana3_2327 0.68 +0.7 2,804,778 + Shewana3_2327 0.86 +0.7 2,805,300 - Shewana3_2328 0.30 -0.9 2,805,305 - Shewana3_2328 0.32 -1.5 2,805,549 - +0.1 2,805,742 + +0.7 2,805,750 - Shewana3_2329 0.10 -0.3 2,805,888 - Shewana3_2329 0.21 +0.7 2,805,924 + Shewana3_2329 0.24 +0.7 2,805,989 - Shewana3_2329 0.29 +0.7 2,806,046 + Shewana3_2329 0.34 +0.7 2,806,054 - Shewana3_2329 0.35 +0.7 2,806,054 - Shewana3_2329 0.35 +0.7 2,806,054 - Shewana3_2329 0.35 +1.7 2,806,066 + Shewana3_2329 0.36 +0.7 2,806,439 + Shewana3_2329 0.66 +0.7
Or see this region's nucleotide sequence