Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2213 and Shewana3_2214 are separated by 3 nucleotides Shewana3_2214 and Shewana3_2215 are separated by 0 nucleotides Shewana3_2215 and Shewana3_2216 are separated by 0 nucleotides
Shewana3_2213: Shewana3_2213 - response regulator receiver modulated CheB methylesterase (RefSeq), at 2,659,747 to 2,660,802
_2213
Shewana3_2214: Shewana3_2214 - chemoreceptor glutamine deamidase CheD (RefSeq), at 2,660,806 to 2,661,426
_2214
Shewana3_2215: Shewana3_2215 - MCP methyltransferase, CheR-type (RefSeq), at 2,661,427 to 2,662,257
_2215
Shewana3_2216: Shewana3_2216 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,662,258 to 2,664,231
_2216
Position (kb)
2661
2662
2663 Strain fitness (log2 ratio)
-1
0
1
2 at 2661.028 kb on - strand, within Shewana3_2214 at 2661.286 kb on + strand, within Shewana3_2214 at 2661.286 kb on + strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.709 kb on + strand, within Shewana3_2215 at 2661.722 kb on - strand, within Shewana3_2215 at 2661.816 kb on - strand, within Shewana3_2215 at 2661.910 kb on - strand, within Shewana3_2215 at 2661.914 kb on + strand, within Shewana3_2215 at 2662.143 kb on + strand, within Shewana3_2215 at 2662.199 kb on + strand at 2662.199 kb on + strand at 2662.413 kb on - strand at 2662.741 kb on - strand, within Shewana3_2216 at 2662.758 kb on + strand, within Shewana3_2216 at 2663.053 kb on - strand, within Shewana3_2216 at 2663.067 kb on + strand, within Shewana3_2216 at 2663.084 kb on - strand, within Shewana3_2216 at 2663.222 kb on - strand, within Shewana3_2216 at 2663.237 kb on + strand, within Shewana3_2216
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 2,661,028 - Shewana3_2214 0.36 +0.3 2,661,286 + Shewana3_2214 0.77 +2.3 2,661,286 + Shewana3_2214 0.77 +1.7 2,661,294 - Shewana3_2214 0.79 +0.7 2,661,294 - Shewana3_2214 0.79 +0.7 2,661,294 - Shewana3_2214 0.79 -1.3 2,661,709 + Shewana3_2215 0.34 -1.3 2,661,722 - Shewana3_2215 0.35 +2.3 2,661,816 - Shewana3_2215 0.47 -1.3 2,661,910 - Shewana3_2215 0.58 +0.7 2,661,914 + Shewana3_2215 0.59 -1.3 2,662,143 + Shewana3_2215 0.86 +0.7 2,662,199 + +0.7 2,662,199 + +1.2 2,662,413 - +0.7 2,662,741 - Shewana3_2216 0.24 -0.3 2,662,758 + Shewana3_2216 0.25 -0.9 2,663,053 - Shewana3_2216 0.40 -0.6 2,663,067 + Shewana3_2216 0.41 +1.6 2,663,084 - Shewana3_2216 0.42 -0.9 2,663,222 - Shewana3_2216 0.49 +1.7 2,663,237 + Shewana3_2216 0.50 +0.7
Or see this region's nucleotide sequence