Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2107 and Shewana3_2108 are separated by 12 nucleotides Shewana3_2108 and Shewana3_2109 are separated by 11 nucleotides Shewana3_2109 and Shewana3_2110 overlap by 1 nucleotides
Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018
_2107
Shewana3_2108: Shewana3_2108 - cytochrome c oxidase, cbb3-type, subunit II (RefSeq), at 2,533,031 to 2,533,657
_2108
Shewana3_2109: Shewana3_2109 - Cbb3-type cytochrome oxidase component (RefSeq), at 2,533,669 to 2,533,845
_2109
Shewana3_2110: Shewana3_2110 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 2,533,845 to 2,534,813
_2110
Position (kb)
2533
2534 Strain fitness (log2 ratio)
-2
-1
0
1 at 2532.124 kb on + strand, within Shewana3_2107 at 2532.124 kb on + strand, within Shewana3_2107 at 2532.215 kb on + strand, within Shewana3_2107 at 2532.266 kb on + strand, within Shewana3_2107 at 2532.364 kb on - strand, within Shewana3_2107 at 2532.436 kb on + strand, within Shewana3_2107 at 2532.498 kb on - strand, within Shewana3_2107 at 2532.710 kb on + strand, within Shewana3_2107 at 2532.710 kb on + strand, within Shewana3_2107 at 2532.798 kb on + strand, within Shewana3_2107 at 2532.884 kb on - strand at 2533.028 kb on - strand at 2533.174 kb on + strand, within Shewana3_2108 at 2533.450 kb on - strand, within Shewana3_2108 at 2533.853 kb on + strand at 2533.890 kb on - strand at 2533.924 kb on + strand at 2533.972 kb on + strand, within Shewana3_2110 at 2534.067 kb on - strand, within Shewana3_2110 at 2534.113 kb on + strand, within Shewana3_2110 at 2534.113 kb on + strand, within Shewana3_2110 at 2534.353 kb on - strand, within Shewana3_2110 at 2534.388 kb on - strand, within Shewana3_2110 at 2534.528 kb on + strand, within Shewana3_2110 at 2534.596 kb on + strand, within Shewana3_2110
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 2,532,124 + Shewana3_2107 0.38 -1.8 2,532,124 + Shewana3_2107 0.38 -2.3 2,532,215 + Shewana3_2107 0.44 -1.6 2,532,266 + Shewana3_2107 0.48 -2.1 2,532,364 - Shewana3_2107 0.54 -0.3 2,532,436 + Shewana3_2107 0.59 -1.1 2,532,498 - Shewana3_2107 0.64 +0.4 2,532,710 + Shewana3_2107 0.78 -2.1 2,532,710 + Shewana3_2107 0.78 -0.3 2,532,798 + Shewana3_2107 0.85 -0.8 2,532,884 - +0.7 2,533,028 - -2.7 2,533,174 + Shewana3_2108 0.23 -1.5 2,533,450 - Shewana3_2108 0.67 -0.6 2,533,853 + -2.6 2,533,890 - -0.4 2,533,924 + -1.7 2,533,972 + Shewana3_2110 0.13 -2.3 2,534,067 - Shewana3_2110 0.23 +0.7 2,534,113 + Shewana3_2110 0.28 -2.7 2,534,113 + Shewana3_2110 0.28 -2.3 2,534,353 - Shewana3_2110 0.52 -1.8 2,534,388 - Shewana3_2110 0.56 -2.1 2,534,528 + Shewana3_2110 0.70 -2.3 2,534,596 + Shewana3_2110 0.78 -1.5
Or see this region's nucleotide sequence