Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2080 and Shewana3_2081 are separated by 106 nucleotides Shewana3_2081 and Shewana3_2082 are separated by 208 nucleotides
Shewana3_2080: Shewana3_2080 - acetyl-CoA carboxylase, biotin carboxylase (RefSeq), at 2,489,279 to 2,491,666
_2080
Shewana3_2081: Shewana3_2081 - sugar (glycoside-Pentoside-hexuronide) transporter (RefSeq), at 2,491,773 to 2,493,218
_2081
Shewana3_2082: Shewana3_2082 - arabinan endo-1,5-alpha-L-arabinosidase (RefSeq), at 2,493,427 to 2,494,497
_2082
Position (kb)
2491
2492
2493
2494 Strain fitness (log2 ratio)
-1
0
1
2 at 2490.967 kb on + strand, within Shewana3_2080 at 2490.977 kb on + strand, within Shewana3_2080 at 2490.982 kb on - strand, within Shewana3_2080 at 2490.992 kb on + strand, within Shewana3_2080 at 2491.017 kb on + strand, within Shewana3_2080 at 2491.031 kb on - strand, within Shewana3_2080 at 2491.375 kb on - strand, within Shewana3_2080 at 2491.667 kb on - strand at 2491.806 kb on - strand at 2492.007 kb on + strand, within Shewana3_2081 at 2492.060 kb on + strand, within Shewana3_2081 at 2492.263 kb on - strand, within Shewana3_2081 at 2492.476 kb on - strand, within Shewana3_2081 at 2492.572 kb on + strand, within Shewana3_2081 at 2492.929 kb on + strand, within Shewana3_2081 at 2493.767 kb on - strand, within Shewana3_2082 at 2493.973 kb on + strand, within Shewana3_2082 at 2493.974 kb on + strand, within Shewana3_2082 at 2494.192 kb on + strand, within Shewana3_2082
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 2,490,967 + Shewana3_2080 0.71 +0.7 2,490,977 + Shewana3_2080 0.71 +0.7 2,490,982 - Shewana3_2080 0.71 +0.7 2,490,992 + Shewana3_2080 0.72 +0.7 2,491,017 + Shewana3_2080 0.73 +0.7 2,491,031 - Shewana3_2080 0.73 +0.7 2,491,375 - Shewana3_2080 0.88 -0.3 2,491,667 - +0.7 2,491,806 - +0.5 2,492,007 + Shewana3_2081 0.16 +0.7 2,492,060 + Shewana3_2081 0.20 -0.3 2,492,263 - Shewana3_2081 0.34 -0.7 2,492,476 - Shewana3_2081 0.49 -1.5 2,492,572 + Shewana3_2081 0.55 +0.7 2,492,929 + Shewana3_2081 0.80 +0.7 2,493,767 - Shewana3_2082 0.32 +0.7 2,493,973 + Shewana3_2082 0.51 +1.9 2,493,974 + Shewana3_2082 0.51 +0.7 2,494,192 + Shewana3_2082 0.71 +0.7
Or see this region's nucleotide sequence