Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1944 and Shewana3_1945 are separated by 173 nucleotides Shewana3_1945 and Shewana3_1946 overlap by 74 nucleotides
Shewana3_1944: Shewana3_1944 - LysR family transcriptional regulator (RefSeq), at 2,311,559 to 2,312,461
_1944
Shewana3_1945: Shewana3_1945 - hypothetical protein (RefSeq), at 2,312,635 to 2,313,834
_1945
Shewana3_1946: Shewana3_1946 - response regulator receiver protein (RefSeq), at 2,313,761 to 2,315,701
_1946
Position (kb)
2312
2313
2314 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2311.894 kb on + strand, within Shewana3_1944 at 2312.308 kb on + strand, within Shewana3_1944 at 2312.360 kb on - strand, within Shewana3_1944 at 2312.456 kb on + strand at 2312.464 kb on - strand at 2312.988 kb on - strand, within Shewana3_1945 at 2313.052 kb on - strand, within Shewana3_1945 at 2313.098 kb on + strand, within Shewana3_1945 at 2313.106 kb on - strand, within Shewana3_1945 at 2313.181 kb on - strand, within Shewana3_1945 at 2313.205 kb on - strand, within Shewana3_1945 at 2313.373 kb on + strand, within Shewana3_1945 at 2313.383 kb on - strand, within Shewana3_1945 at 2313.402 kb on - strand, within Shewana3_1945 at 2313.457 kb on + strand, within Shewana3_1945 at 2313.514 kb on - strand, within Shewana3_1945 at 2313.923 kb on - strand at 2314.155 kb on - strand, within Shewana3_1946 at 2314.315 kb on + strand, within Shewana3_1946 at 2314.387 kb on - strand, within Shewana3_1946 at 2314.586 kb on - strand, within Shewana3_1946 at 2314.765 kb on - strand, within Shewana3_1946
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 2,311,894 + Shewana3_1944 0.37 -0.3 2,312,308 + Shewana3_1944 0.83 +2.7 2,312,360 - Shewana3_1944 0.89 -0.3 2,312,456 + +0.7 2,312,464 - +1.3 2,312,988 - Shewana3_1945 0.29 +1.3 2,313,052 - Shewana3_1945 0.35 +0.7 2,313,098 + Shewana3_1945 0.39 +0.7 2,313,106 - Shewana3_1945 0.39 +0.7 2,313,181 - Shewana3_1945 0.46 +3.3 2,313,205 - Shewana3_1945 0.47 +0.7 2,313,373 + Shewana3_1945 0.61 +0.0 2,313,383 - Shewana3_1945 0.62 +2.8 2,313,402 - Shewana3_1945 0.64 +2.7 2,313,457 + Shewana3_1945 0.69 -0.3 2,313,514 - Shewana3_1945 0.73 +0.7 2,313,923 - +0.7 2,314,155 - Shewana3_1946 0.20 +0.7 2,314,315 + Shewana3_1946 0.29 +0.7 2,314,387 - Shewana3_1946 0.32 +0.7 2,314,586 - Shewana3_1946 0.43 +0.7 2,314,765 - Shewana3_1946 0.52 +0.7
Or see this region's nucleotide sequence