Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1921
Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Tetracycline 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,282,938 | + | Shewana3_1920 | 0.43 | -1.3 | |
2,282,987 | + | Shewana3_1920 | 0.46 | -0.6 | |
2,283,186 | - | Shewana3_1920 | 0.57 | +0.7 | |
2,283,191 | + | Shewana3_1920 | 0.58 | +0.7 | |
2,283,353 | - | Shewana3_1920 | 0.68 | +0.7 | |
2,283,565 | + | Shewana3_1920 | 0.80 | +0.3 | |
2,283,702 | + | Shewana3_1920 | 0.88 | +1.1 | |
2,283,777 | - | +0.7 | |||
2,283,963 | - | Shewana3_1921 | 0.11 | -1.4 | |
2,284,463 | + | -2.0 | |||
2,284,463 | + | -0.2 | |||
2,284,486 | + | +0.2 | |||
2,284,588 | + | +0.3 | |||
2,284,599 | + | +0.7 | |||
2,284,707 | + | +0.7 | |||
2,284,735 | + | +1.7 | |||
2,284,776 | - | -1.7 | |||
2,284,792 | - | -0.4 | |||
2,284,922 | + | Shewana3_1922 | 0.15 | +0.4 | |
2,285,094 | + | Shewana3_1922 | 0.28 | +0.7 | |
2,285,237 | + | Shewana3_1922 | 0.38 | +0.7 | |
2,285,460 | - | Shewana3_1922 | 0.54 | +0.7 |
Or see this region's nucleotide sequence