Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1908
Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Tetracycline 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,264,044 | - | Shewana3_1907 | 0.46 | -1.5 | |
2,264,054 | - | Shewana3_1907 | 0.47 | -2.3 | |
2,264,105 | + | Shewana3_1907 | 0.52 | +0.7 | |
2,264,161 | - | Shewana3_1907 | 0.57 | -1.2 | |
2,264,166 | - | Shewana3_1907 | 0.58 | +0.7 | |
2,264,408 | - | Shewana3_1907 | 0.80 | +1.7 | |
2,264,408 | - | Shewana3_1907 | 0.80 | -0.8 | |
2,264,408 | - | Shewana3_1907 | 0.80 | +0.7 | |
2,264,432 | - | Shewana3_1907 | 0.83 | +0.3 | |
2,264,531 | - | -1.4 | |||
2,264,531 | - | -0.3 | |||
2,264,531 | - | +0.7 | |||
2,264,531 | - | -0.8 | |||
2,264,531 | - | -0.3 | |||
2,264,820 | - | Shewana3_1908 | 0.15 | -1.3 | |
2,264,923 | - | Shewana3_1908 | 0.24 | -0.7 | |
2,265,095 | - | Shewana3_1908 | 0.39 | -0.5 | |
2,265,299 | - | Shewana3_1908 | 0.56 | -1.7 | |
2,265,587 | - | Shewana3_1908 | 0.80 | -1.9 | |
2,265,973 | + | -0.3 | |||
2,265,995 | + | -0.3 | |||
2,266,025 | - | +0.7 | |||
2,266,057 | + | +0.7 | |||
2,266,060 | - | -1.3 | |||
2,266,083 | - | +0.3 | |||
2,266,090 | + | +0.7 | |||
2,266,586 | + | Shewana3_1909 | 0.53 | +0.7 | |
2,266,641 | + | Shewana3_1909 | 0.62 | -0.3 |
Or see this region's nucleotide sequence