Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1903 and Shewana3_1904 are separated by 73 nucleotides Shewana3_1904 and Shewana3_1905 are separated by 360 nucleotides Shewana3_1905 and Shewana3_1906 are separated by 28 nucleotides
Shewana3_1903: Shewana3_1903 - restriction endonuclease (RefSeq), at 2,259,683 to 2,261,605
_1903
Shewana3_1904: Shewana3_1904 - GCN5-related N-acetyltransferase (RefSeq), at 2,261,679 to 2,262,101
_1904
Shewana3_1905: Shewana3_1905 - hypothetical protein (RefSeq), at 2,262,462 to 2,262,698
_1905
Shewana3_1906: Shewana3_1906 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,262,727 to 2,263,464
_1906
Position (kb)
2261
2262
2263 Strain fitness (log2 ratio)
-1
0
1 at 2260.683 kb on - strand, within Shewana3_1903 at 2260.707 kb on + strand, within Shewana3_1903 at 2260.712 kb on + strand, within Shewana3_1903 at 2260.894 kb on + strand, within Shewana3_1903 at 2261.193 kb on + strand, within Shewana3_1903 at 2261.201 kb on - strand, within Shewana3_1903 at 2261.201 kb on - strand, within Shewana3_1903 at 2261.201 kb on - strand, within Shewana3_1903 at 2261.275 kb on + strand, within Shewana3_1903 at 2261.352 kb on - strand, within Shewana3_1903 at 2261.352 kb on - strand, within Shewana3_1903 at 2261.365 kb on + strand, within Shewana3_1903 at 2261.383 kb on - strand, within Shewana3_1903 at 2261.424 kb on - strand at 2261.635 kb on + strand at 2261.636 kb on + strand at 2261.744 kb on + strand, within Shewana3_1904 at 2262.050 kb on - strand, within Shewana3_1904 at 2262.098 kb on - strand at 2262.161 kb on - strand at 2262.245 kb on - strand at 2262.385 kb on + strand at 2262.646 kb on - strand, within Shewana3_1905 at 2262.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 2,260,683 - Shewana3_1903 0.52 +0.7 2,260,707 + Shewana3_1903 0.53 -0.8 2,260,712 + Shewana3_1903 0.54 +0.7 2,260,894 + Shewana3_1903 0.63 +0.7 2,261,193 + Shewana3_1903 0.79 +0.7 2,261,201 - Shewana3_1903 0.79 +0.7 2,261,201 - Shewana3_1903 0.79 +0.7 2,261,201 - Shewana3_1903 0.79 -0.3 2,261,275 + Shewana3_1903 0.83 +0.7 2,261,352 - Shewana3_1903 0.87 +0.7 2,261,352 - Shewana3_1903 0.87 +0.7 2,261,365 + Shewana3_1903 0.87 +0.7 2,261,383 - Shewana3_1903 0.88 -1.3 2,261,424 - +0.7 2,261,635 + +0.7 2,261,636 + +0.7 2,261,744 + Shewana3_1904 0.15 +0.7 2,262,050 - Shewana3_1904 0.88 +0.7 2,262,098 - +0.7 2,262,161 - +0.7 2,262,245 - +0.7 2,262,385 + +0.7 2,262,646 - Shewana3_1905 0.78 -0.6 2,262,745 - +0.7
Or see this region's nucleotide sequence